Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M07
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    93   6e-20
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    26   6.1  
Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 41/67 (61%), Positives = 52/67 (77%)
 Frame = +2

Query: 140 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 319
           ERTF+ +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 320 VKYMSSG 340
           ++YMSSG
Sbjct: 65  IEYMSSG 71


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 299 RPFFPGLVKYMSSG 340
           +PFFP L+ YMSSG
Sbjct: 33  KPFFPLLIDYMSSG 46


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 11  TIKCGILISLYFISIK 58
           ++KCG L+SLY ISI+
Sbjct: 178 SVKCGTLLSLYSISIQ 193


>Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical
           protein F35C11.7 protein.
          Length = 125

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 255 PRKSCCSNITVT*RPGRFS 311
           PR +CC+N  VT   GRF+
Sbjct: 98  PRTTCCNNFRVTSYLGRFA 116


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 264 SSEGQTNFNPTNLKP 220
           SS GQ  FNPTNL P
Sbjct: 561 SSPGQALFNPTNLYP 575


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 264 SSEGQTNFNPTNLKP 220
           SS GQ  FNPTNL P
Sbjct: 561 SSPGQALFNPTNLYP 575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,019,619
Number of Sequences: 27780
Number of extensions: 115881
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)