Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M06
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   2.4  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   2.4  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    23   7.3  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    23   9.6  

>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 290 LQRHVRYSHVITTPSPKKFDFGNISRLW 207
           LQ+H++Y   +  P P  F   + SR W
Sbjct: 31  LQKHLKYLTKMLDPLPSPFTVLDASRAW 58


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 160 KKSPTRAAWLWTTCHYHSRLIF 225
           K +P R   LW +CH++  +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 164 FFGPVLLSHISHLK*NNYTIE*THLSLNY-SIKANFRVCKTHFYSQ 30
           F G  + +H+S +  NN +++    ++ + SI   F +   +F+ Q
Sbjct: 459 FIGATVFAHVSQIMFNNMSVKWAVATMAFISISIPFIIYTFYFFGQ 504


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 141 AEENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWS 254
           + E W  E+      ++  +  P P+  PE+  F  W+
Sbjct: 213 SSEGWPSELRLTSS-IIQTLGTPNPSMWPELSTFPDWN 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,168,835
Number of Sequences: 5004
Number of extensions: 20393
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)