Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M06
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 37 0.002
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 32 0.092
03_01_0548 + 4099386-4099847,4100435-4101316 28 1.5
03_01_0547 + 4093196-4093657,4094267-4095148 28 1.5
03_01_0544 + 4082528-4082989,4083585-4084466 28 1.5
03_01_0543 + 4076981-4077442,4078145-4079026 28 1.5
10_02_0110 - 5371536-5372882 27 3.5
08_01_0474 - 4173245-4174195 26 6.0
07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501 26 6.0
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 26 6.0
01_01_0183 + 1565166-1565306,1565408-1565503,1567023-1567124,156... 26 6.0
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 25 8.0
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 228 EIKLFGRWSCYDVRVSDMSLQDY 296
E+KLF RWS DV+V+D+SL DY
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADY 32
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 31.9 bits (69), Expect = 0.092
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 231 IKLFGRWSCYDVRVSDMSLQDY 296
+KLF WS DV+V+D+SL DY
Sbjct: 12 VKLFNCWSFEDVQVNDISLADY 33
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 197 VVHNHAARVGDFFGPVLLSHISHL 126
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 197 VVHNHAARVGDFFGPVLLSHISHL 126
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 197 VVHNHAARVGDFFGPVLLSHISHL 126
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 197 VVHNHAARVGDFFGPVLLSHISHL 126
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 153 WTEEVADAGGMVVDNMPLPQPADIPEIKL 239
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
>08_01_0474 - 4173245-4174195
Length = 316
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 156 TEEVADAGGMVVDNMPLPQPADIPEIKLFGR 248
+EE A A D+M P DIPE+ F R
Sbjct: 158 SEEEAAAAAAAFDDMGTPAARDIPEVTGFVR 188
>07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501
Length = 283
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 159 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVRVSD 278
E +AGG V + P PA + +I GRWS Y +++
Sbjct: 4 EADVEAGG--VRDYEDPPPAPLVDIDELGRWSLYRAVIAE 41
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +1
Query: 127 RCEIWLRRTGPKKSPTRAAWLWTTCHYHSRLIFPKSNFLGDGVVMTCEYRTCLCR 291
R + L P S ++ + C + +++ GD VV+ YRT +C+
Sbjct: 7 RQRVLLAHLLPSSSSDQSLLSASACAAGDSAAYQRTSAYGDDVVVVAAYRTPICK 61
>01_01_0183 +
1565166-1565306,1565408-1565503,1567023-1567124,
1567478-1567570,1567648-1567715,1567806-1567879,
1567987-1568119,1568426-1568441
Length = 240
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -3
Query: 119 NNYTIE*THLSLNYS---IKANFRVCKTHFYSQF 27
N+Y IE HLS NY+ ++ + + +FYS++
Sbjct: 166 NDYAIESIHLSCNYAYKDVEQDITLGDDYFYSRY 199
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -3
Query: 251 PSPKKFDFG-----NISRLW*WHVVHNHAARVGDFFGPVLLSHISHL 126
PSP++ FG +S +W W +++ VGD P+++ S L
Sbjct: 9 PSPRR-GFGPKRSFQVSNIWAWKLLYGLFKIVGDKLAPLVIREYSSL 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,343,219
Number of Sequences: 37544
Number of extensions: 129456
Number of successful extensions: 321
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -