Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M06
(298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 39 7e-04
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 1.0
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 1.0
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z22177-5|CAA80150.1| 576|Caenorhabditis elegans Hypothetical pr... 27 3.2
AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein. 27 3.2
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 26 4.2
AF036694-8|AAB88346.2| 607|Caenorhabditis elegans Hypothetical ... 26 4.2
Z74036-3|CAA98488.1| 517|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 25 7.4
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +3
Query: 147 ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVRVSDMSLQDY 296
+NW E +V D P + PE+ LFG+WS V VSD+SL DY
Sbjct: 3 DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDY 44
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 148 RTGPKKSPTRAAWLWTTCHYHS 213
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 148 RTGPKKSPTRAAWLWTTCHYHS 213
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 224 NISRLW*WHVVHNHAARVGDFFG 156
+ S W WH+ H DFFG
Sbjct: 42 SFSGFWHWHLTMQHCNNENDFFG 64
>Z22177-5|CAA80150.1| 576|Caenorhabditis elegans Hypothetical
protein ZK512.6 protein.
Length = 576
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 86 LNYSIKANFRVCKTHFYSQFTN 21
+++ I+ NF KTH Y +T+
Sbjct: 82 ISFGIRCNFGAAKTHMYKNYTD 103
>AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein.
Length = 563
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 86 LNYSIKANFRVCKTHFYSQFTN 21
+++ I+ NF KTH Y +T+
Sbjct: 69 ISFGIRCNFGAAKTHMYKNYTD 90
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 287 QRHVRYSHVITTPSPKKFDFGNISRLW 207
Q H++ H P P FD+ N R W
Sbjct: 608 QHHLQQQHQSQPPHPYHFDYYNRKRSW 634
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 287 QRHVRYSHVITTPSPKKFDFGNISRLW 207
Q H++ H P P FD+ N R W
Sbjct: 608 QHHLQQQHQSQPPHPYHFDYYNRKRSW 634
>AF036694-8|AAB88346.2| 607|Caenorhabditis elegans Hypothetical
protein CD4.8 protein.
Length = 607
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 99 SFYSVIILF*V*NMAEENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVRV 272
S+Y+V L + ++++ E+ + VD P P+PAD +L R S Y++ +
Sbjct: 316 SYYAVFYLIIFRSSSDDDDDLEIIET----VDGYPKPEPADFDFEELLNRDSTYNLLI 369
>Z74036-3|CAA98488.1| 517|Caenorhabditis elegans Hypothetical
protein F55C10.4 protein.
Length = 517
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 160 KKSPTRAAWLWTTCHYHSRLIFPKSNFLGDGVVM 261
K T A+ +T HS +PKS LG+ V+
Sbjct: 38 KNHKTIEAYQYTHTFIHSAYYYPKSKSLGENAVV 71
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 178 AAWLWTTCHYHS 213
+A LWT+CHY+S
Sbjct: 966 SAALWTSCHYYS 977
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,453,202
Number of Sequences: 27780
Number of extensions: 114566
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -