Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M06
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   0.60 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   0.60 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   0.60 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   9.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   9.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.60
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 197 VVHNHAARVGDFFGPVLLSHISHL 126
           +V NH  ++ + + PVL  H +H+
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHI 368


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.4 bits (48), Expect = 0.60
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 197 VVHNHAARVGDFFGPVLLSHISHL 126
           +V NH  ++ + + PVL  H +H+
Sbjct: 56  IVLNHPGQISNGYTPVLDCHTAHI 79


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.60
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 197 VVHNHAARVGDFFGPVLLSHISHL 126
           +V NH  ++ + + PVL  H +H+
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHI 368


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 161 FGPVLLSHISHLK*NNYTI 105
           F P+LL H++ L+   Y+I
Sbjct: 883 FAPLLLLHLTPLQPRFYSI 901


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +3

Query: 96  SSFYSVIILF*V*NMAEENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSC 257
           +S  S I++F V         + VAD          L  P+ + E+     WSC
Sbjct: 378 TSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVYPSAVLELPGSSIWSC 431


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 144 EENWTEEVA 170
           E+NW +EVA
Sbjct: 2   EQNWIDEVA 10


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,156
Number of Sequences: 438
Number of extensions: 1463
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)