Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M05
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    24   2.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    24   3.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    23   4.2  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    23   4.2  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   5.6  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    23   5.6  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    23   7.4  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    23   7.4  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    22   9.7  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    22   9.7  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    22   9.7  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    22   9.7  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 79  FNRKTSTAGYRSPAKISTTTGFTPPASSGFPRHA 180
           F +  ST    +PA  ST + F  PA++G   +A
Sbjct: 152 FGKPASTTNTTTPAAASTGSLFGKPAATGTTSNA 185


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 91  TSTAGYRSPAKISTTTGFTPPASS 162
           TS++   SP+  STTT  +P +SS
Sbjct: 136 TSSSSSSSPSSSSTTTTTSPSSSS 159


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 86  ERRPLLDIGLPQRSLRRPVL 145
           ERRP+  +  P RS+RR +L
Sbjct: 839 ERRPIRRLWWPLRSIRRSLL 858



 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 76  PFNRKTSTAGYRSPAKISTTT 138
           P N    T GY SP+  ST +
Sbjct: 593 PVNNNFRTVGYASPSNASTAS 613


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 88  KTSTAGYRSPAKISTTTGFTPPASSG 165
           K+STA   +P K ST +GF    S+G
Sbjct: 170 KSSTAETNAPEKYSTRSGFGFGFSTG 195


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +1

Query: 73  HPFNRKTSTAGYRSPAKISTT---TGFT 147
           HPF R  S     SP+K S T    GFT
Sbjct: 88  HPFTRVKSCFSSSSPSKFSFTQWLVGFT 115


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 192 FSVSSMSREPAGCGWRKTGRRRDLCGRP 109
           FSV  +S +  GCG   TG  R +   P
Sbjct: 602 FSVLLLSSKAGGCGLNLTGSTRLIIYEP 629


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 150 WRKTGRRRDLCGRPISSSGRLSIEWMDGN 64
           WR T     L G P+SS G +S+++   N
Sbjct: 169 WRLTDEGPILAGYPLSSPG-ISVQFRPSN 196


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 82  NRKTSTAGYRSPAKISTTTGFTPPASS 162
           N++ S+     P+  + T+G  PP+S+
Sbjct: 234 NQRQSSEAAEQPSSKNNTSGANPPSSN 260


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 544

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 73 GWKQESERIITQLSSFCI 20
          G+KQE +R  +  +SFC+
Sbjct: 32 GYKQEFKREFSAWTSFCV 49


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 183 SSMSREPAGCGWRKTGRRRDLCGRPISSSGRLSIEWMD 70
           ++ S+  A    RKT RRR    RP  S+  L  E  D
Sbjct: 154 ATASKNGAKSSKRKTTRRRRTPNRPKKSAEELDKEMDD 191


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 129 RDLCGRPISSSGRLSIEWMDGNKKVR 52
           R +C    S  GRL+ + +DG+K +R
Sbjct: 897 RSICHGEHSIFGRLNAKGIDGSKYLR 922


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 108 ISSSGRLSIEWMDGNKKVRE 49
           I+S+ + S  W+DGN  +++
Sbjct: 235 INSAAKSSFTWLDGNALLQD 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 880,136
Number of Sequences: 5004
Number of extensions: 14654
Number of successful extensions: 47
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)