Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M05
(194 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0004 - 23397-23401,24015-24054,24895-26007 29 0.52
11_01_0005 - 24998-25002,25616-25655,26496-27608 29 0.52
03_05_1045 - 29914581-29914829,29914840-29916083,29919055-299191... 28 1.2
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 26 4.9
02_01_0302 - 2021221-2023305 26 4.9
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 25 6.4
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13... 25 6.4
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174... 25 6.4
12_01_0694 - 5923836-5924450 25 8.5
08_02_0574 - 18867623-18868033,18869751-18870209 25 8.5
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 25 8.5
06_03_0816 - 24912543-24913664 25 8.5
06_01_0093 - 776567-777335,777449-777747 25 8.5
06_01_0077 + 626126-626137,626222-627421 25 8.5
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 25 8.5
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 25 8.5
>12_01_0004 - 23397-23401,24015-24054,24895-26007
Length = 385
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 83 IERRPLLDIGLPQRSLRRPVLRHPHPAGSRDMLDTL 190
++ LLD + + L P L P PAGSRD L L
Sbjct: 76 VQAHHLLDTAMRRLQLELPRLLAPPPAGSRDRLRAL 111
>11_01_0005 - 24998-25002,25616-25655,26496-27608
Length = 385
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 83 IERRPLLDIGLPQRSLRRPVLRHPHPAGSRDMLDTL 190
++ LLD + + L P L P PAGSRD L L
Sbjct: 76 VQAHHLLDTAMRRLQLELPRLLAPPPAGSRDRLRAL 111
>03_05_1045 -
29914581-29914829,29914840-29916083,29919055-29919199,
29919727-29919792,29919882-29920108,29920204-29920310,
29920428-29920502,29920600-29920688,29920768-29920848,
29921631-29921702,29922056-29922178
Length = 825
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 159 GCGWRKTGRRRDLCGRPISSSGRLSIEWMDGNKK 58
GCG GRRR R GRLS ++D N+K
Sbjct: 721 GCGAGGGGRRRARQARRRPRRGRLSNIYLDANRK 754
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 183 SSMSREPAGCGWRKTGRRRDLCGRPISSSGRLSIEWMDG 67
SS S AG GWR+ G+ + S++ L I W +G
Sbjct: 60 SSCSHAEAGAGWRRRGQSQR------SNNSLLHITWAEG 92
>02_01_0302 - 2021221-2023305
Length = 694
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 73 HPFNRKTSTAGYRSPAKISTTTGF-TPPASSGFPRH 177
HP ++T Y SP STT + +PP P H
Sbjct: 483 HPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSH 518
>07_03_0502 +
18826595-18826660,18826815-18826885,18828963-18829056,
18829575-18831521
Length = 725
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 150 WRKTGRRRDLCGRPISSSGRLSIEWM 73
WR RD RPI+ G I+W+
Sbjct: 281 WRDPWLPRDFSRRPITRKGNCRIKWV 306
>05_01_0019 -
129767-129931,130078-130257,130491-130728,130833-131236,
131284-131427,131709-131995,132071-132150,132563-132714,
132793-132909,133292-133450,133546-133946,134106-134423,
135050-135095,135203-135310
Length = 932
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 11 RALNTEGTQLCNNSLTFLFPSIHSIERRPLLDIGLP 118
R+L ++CNNS + ++ +E P +DI P
Sbjct: 539 RSLPEHHNRICNNSKSMTHLALLKLEVAPFMDITTP 574
>02_05_0769 +
31616644-31616875,31616980-31617203,31617308-31617426,
31617528-31617684,31617928-31618029,31618111-31618230,
31618761-31618855,31619900-31619984,31620090-31620180,
31620534-31620618,31620702-31620806,31621019-31621894,
31622016-31622124,31622266-31622414,31622518-31622737
Length = 922
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 111 VSRKDLYDDRFYATRIQRVPATCL 182
+SR+D+ DR AT+I+ + +CL
Sbjct: 401 LSRRDIVFDRHCATKIESLTLSCL 424
>12_01_0694 - 5923836-5924450
Length = 204
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 168 EPAGCGWRKTGRRRDLCGRPISSSGRLSI 82
E AG G R+ G+RR GR +++GRL +
Sbjct: 173 EAAG-GGRRGGKRRATAGRGDTTTGRLGM 200
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 187 CVKHVAGTRW 158
CVKH+AG RW
Sbjct: 202 CVKHLAGKRW 211
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 98 LLDIGLPQRSLRRPVLRHPHP 160
L+ LP+ SLR P L HP P
Sbjct: 14 LITASLPKPSLRPPRLPHPKP 34
>06_03_0816 - 24912543-24913664
Length = 373
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 101 LDIGLPQRSLRRPVLRHPHPAGSRDMLDTLK 193
L +GLP+ +L R + RH D+L LK
Sbjct: 191 LGLGLPEETLERRLRRHDQHGVDDDLLLQLK 221
>06_01_0093 - 776567-777335,777449-777747
Length = 355
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 109 RSPAKISTTTGFTPPASS 162
+SP+KIS +G PPA+S
Sbjct: 2 QSPSKISDASGSMPPATS 19
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 109 RSPAKISTTTGFTPPASS 162
+SP+K+S +G PPA+S
Sbjct: 13 QSPSKVSEASGSAPPATS 30
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +1
Query: 97 TAGYRSP--AKISTTTGFTPPASSGFPRHA*HT 189
T GY P + +S T FTP +G P+ T
Sbjct: 616 TQGYYGPMISALSVTPNFTPTVRNGIPKRGNRT 648
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 150 WRKTGRRRDLCGRPISSSGRLSIEWM 73
WR +DL RP+SS ++W+
Sbjct: 1334 WRDPWIPKDLSRRPVSSKANCRLKWV 1359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,106,293
Number of Sequences: 37544
Number of extensions: 109423
Number of successful extensions: 405
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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