Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M05
         (194 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92847-1|CAE46676.1|  208|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    26   3.2  
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    26   3.2  
X70832-1|CAA50180.1|  500|Caenorhabditis elegans Cytoplasmic int...    25   5.6  
AF047657-10|AAK18940.2|  500|Caenorhabditis elegans Intermediate...    25   5.6  
Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z92847-1|CAE46676.1|  208|Caenorhabditis elegans Hypothetical
           protein H01G02.3a protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 85  RKTSTAGYRSPAKISTTTGFTPPASS 162
           R+TS A   S +  S++ GF PP+SS
Sbjct: 101 RRTSQASSSSSSSSSSSAGFAPPSSS 126


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 96  GRLSIEWMDGNKKVRELL 43
           G   IEW+D  KK+RELL
Sbjct: 679 GENLIEWIDPEKKLRELL 696


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 20  NTEGTQLCNNSLTFLFPSIHSIER 91
           N EGT +C   +T +  ++H  ER
Sbjct: 436 NLEGTTICKEEVTIIHMTVHPSER 459


>X70832-1|CAA50180.1|  500|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 82  NRKTSTAGYRSPAKISTTTGFTPPA-SSGF 168
           +  T  AGYRS   ++TTT  T    SSG+
Sbjct: 386 SNSTGAAGYRSSTHVATTTTTTTNGYSSGY 415


>AF047657-10|AAK18940.2|  500|Caenorhabditis elegans Intermediate
           filament, c protein 1 protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 82  NRKTSTAGYRSPAKISTTTGFTPPA-SSGF 168
           +  T  AGYRS   ++TTT  T    SSG+
Sbjct: 386 SNSTGAAGYRSSTHVATTTTTTTNGYSSGY 415


>Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical
           protein C34C12.5 protein.
          Length = 268

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 17  LNTEGTQLCNNSLTFLFPSIHSIERRPLLDIGLPQRSL 130
           ++ +   L NN +  L PSI S+ +  +L++G+ + S+
Sbjct: 56  VSLQSLNLWNNQIEDLPPSISSLPKLRILNVGMNKLSI 93


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 73  HPFNRKTSTAGYRSPAKISTTTGFTPPASSGFP 171
           +PF   T+T    S  KISTTT  +  A S  P
Sbjct: 537 NPFISITTTPDSASSQKISTTTAISHSAYSASP 569


>Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical
           protein T05F1.5 protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 70  IHPFNRKTSTAGYRSPAKISTTTGFTPPASSGFPRHA*HTE 192
           I+  NR  +  G+RSP+  S+    +PP S+     + H+E
Sbjct: 80  INQHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSE 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,917,065
Number of Sequences: 27780
Number of extensions: 84153
Number of successful extensions: 262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)