Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M05
         (194 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   4.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          19   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   5.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    18   9.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    18   9.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    18   9.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    18   9.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    18   9.4  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 5   GTRALNTEGTQLCNNS 52
           G R+  T  +Q+CNNS
Sbjct: 351 GRRSWVTRESQICNNS 366


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +1

Query: 112 SPAKISTTTGFTPPASSGFPRH 177
           SP    +T GF PP+      H
Sbjct: 301 SPGVYPSTAGFLPPSYHPHQHH 322


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 129  YDDRFYATRIQRVPATCL 182
            +DD+F AT  + V   CL
Sbjct: 1282 FDDKFTATYKEDVKLPCL 1299


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 103 GYRSPAKISTTTGF 144
           G  SPA +S T+GF
Sbjct: 107 GDLSPAAVSYTSGF 120


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 162 RVPATCLT 185
           RVPATC T
Sbjct: 195 RVPATCCT 202


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 96  GRLSIEWMDGNKKVRELL 43
           G L I W +G K   ELL
Sbjct: 385 GDLWISWEEGMKVFDELL 402


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 98 VDVFRLNGWMETR 60
          VD+F    W+E+R
Sbjct: 34 VDMFVRQSWIESR 46


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 126 DLCGRPISSSGRLSIEWMD 70
           DL   P  SSG + + W +
Sbjct: 52  DLFSGPEESSGGVELGWFN 70


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 21  IQKELSCVIILSLSCFH 71
           IQK L C  + SLS ++
Sbjct: 139 IQKNLQCCGVHSLSDYN 155


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 147 RKTGRRRDLCGRPISSSGRL 88
           +KT   +D+  RP+ +  +L
Sbjct: 122 KKTMENKDITKRPLPNESQL 141


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 127 STTTGFTPPASS 162
           +T T  TPPASS
Sbjct: 360 TTETVNTPPASS 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,381
Number of Sequences: 438
Number of extensions: 809
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)