Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M03
         (93 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    23   4.1  
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    23   4.1  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    23   5.4  

>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   AEERRPQAPKKEDCNRRRKKT 63
           A+  RP  P   D NRRR+K+
Sbjct: 80  AQYFRPAPPHPNDRNRRRRKS 100


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 102

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 62 VFFLRRLQSSFFG-ACGLL 9
          V F+R L SSFFG A G+L
Sbjct: 6  VSFVRNLTSSFFGCAAGIL 24


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 3   RRKKTASAEERRLQSPKKEDCNRRRKKTA 89
           +RK   S+E+   ++ KKE+  +RRKK A
Sbjct: 427 KRKSVESSEKDEDEAAKKEE--KRRKKEA 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.123    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,265
Number of Sequences: 5004
Number of extensions: 2227
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 12
effective length of database: 2,302,430
effective search space used: 41443740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)