Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M03
         (93 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0519 - 25131614-25134778                                         26   3.6  
10_05_0058 + 8662996-8663826                                           26   4.8  

>03_05_0519 - 25131614-25134778
          Length = 1054

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +1

Query: 1   AEERRPQAP----KKEDCNRRRKKTAIAEER 81
           AEE++P+AP    K E+  +  KK+A A+++
Sbjct: 188 AEEKKPEAPAEEKKAEEAKKEEKKSAEADKK 218


>10_05_0058 + 8662996-8663826
          Length = 276

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   AEERRPQAPKKEDCNRRRKKTAIAEE 78
           A +    AP+K  CN+R++  A+A E
Sbjct: 184 ANKANTAAPRKAACNKRKEAPALAPE 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.123    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,887
Number of Sequences: 37544
Number of extensions: 16189
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 14,793,348
effective HSP length: 12
effective length of database: 14,342,820
effective search space used: 258170760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)