Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M03
         (93 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...    27   1.8  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF067942-8|AAG45575.1|  349|Caenorhabditis elegans Serpentine re...    25   7.2  
Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
          synthetase protein1, isoform b protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -2

Query: 86 SLLSSAIAVFFLRRLQSSFFGACGLLS 6
          S+LS + AV FLRR  SSFFG    LS
Sbjct: 6  SMLSRS-AVSFLRRRSSSFFGTSVFLS 31


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 3   RRKKTASAEERRLQSPKKEDCNRRRK 80
           RR+++ +A  RR QSP++    RRR+
Sbjct: 479 RRRRSPAAAPRRRQSPQRRRSPRRRR 504


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 6   RKKTASAEERRLQSPKKEDCNR 71
           ++K+  AE+++ + PKKED  +
Sbjct: 116 KEKSNKAEDKKSEDPKKEDAKK 137


>AF067942-8|AAG45575.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein62 protein.
          Length = 349

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 83  LLSSAIAVFFLRRLQSSFFGAC 18
           L+ S+ A+FF+  LQ  +F AC
Sbjct: 214 LIQSSKALFFISMLQILYFSAC 235


>Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical
           protein F43G9.10 protein.
          Length = 466

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 3   RRKKTASAEERRLQSPKKEDCNRRRK 80
           RR++ +S EE R +  + ED  RRR+
Sbjct: 80  RRRRESSDEEDRRRHRRHEDYGRRRQ 105


>Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical
           protein F58B3.7 protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   RRKKTASAEERRLQSPKKEDCNRRRKKTAI 92
           +R+KTA    +RLQ   +E+  +R K  AI
Sbjct: 134 QREKTAREVAKRLQREHEEEDKKRSKGAAI 163


>Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical
           protein T05G5.1 protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 3   RRKKTASAEERRLQSPKKEDCNRRRKKTA 89
           RR++  +  ERR+Q  +  D  RRR+  A
Sbjct: 151 RREQQRAEAERRIQEQRVRDDERRRQHEA 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.123    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,812
Number of Sequences: 27780
Number of extensions: 15158
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 12,740,198
effective HSP length: 12
effective length of database: 12,406,838
effective search space used: 223323084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)