Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M03
         (93 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   0.33 
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   0.33 
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   0.33 
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   0.33 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   0.33 
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   0.33 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    19   4.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   5.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   7.1  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   RKKTASAEERRLQSPKKEDCNRRRKKTA 89
           RK+ + + ER  +S K E+  R+ +KT+
Sbjct: 36  RKRYSRSREREQKSYKNENSYRKYRKTS 63


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   RKKTASAEERRLQSPKKEDCNRRRKKTA 89
           RK+ + + ER  +S K E+  R+ +KT+
Sbjct: 36  RKRYSRSREREQKSYKNENSYRKYRKTS 63


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   RKKTASAEERRLQSPKKEDCNRRRKKTA 89
           RK+ + + ER  +S K E+  R+ +KT+
Sbjct: 36  RKRYSRSREREQKSYKNENSYRKYRKTS 63


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   RKKTASAEERRLQSPKKEDCNRRRKKTA 89
           RK+ + + ER  +S K E+  R+ +KT+
Sbjct: 36  RKRYSRSREREQKSYKNENSYRKYRKTS 63


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   RKKTASAEERRLQSPKKEDCNRRRKKTA 89
           RK+ + + ER  +S K E+  R+ +KT+
Sbjct: 36  RKRYSRSREREQKSYKNENSYRKYRKTS 63


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   RKKTASAEERRLQSPKKEDCNRRRKKTA 89
           RK+ + + ER  +S K E+  R+ +KT+
Sbjct: 36  RKRYSRSREREQKSYKNENSYRKYRKTS 63


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 35 SFFGACGLL 9
          SFFG CG +
Sbjct: 66 SFFGCCGAI 74


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 68  IAVFFLRRLQSSFFGACGL 12
           + +FF    +++FF +CG+
Sbjct: 241 VNIFFPGGKKTTFFESCGV 259


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -2

Query: 89  CSLLSSAIAVFFLRRLQSSFFGACGLL 9
           CS  +  + +  L+ L   F   CG L
Sbjct: 504 CSTATPMMVINMLQNLYEQFDSFCGQL 530


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 21  SAEERRLQSPKKEDCNRRRKKT 86
           S   R+    +KE   RRR++T
Sbjct: 393 SPPPRQTPPSRKESGRRRRRRT 414



 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 10  RRPQAPKKEDCNRRRKKT 63
           R+    +KE   RRR++T
Sbjct: 397 RQTPPSRKESGRRRRRRT 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.123    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,929
Number of Sequences: 438
Number of extensions: 226
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 12
effective length of database: 141,087
effective search space used:  2539566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)