Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_M02
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 242 9e-65
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564... 29 1.5
10_08_0211 + 15899017-15901392 29 2.0
08_01_0346 - 3063440-3064189 28 3.6
01_06_1411 + 37127098-37128279 28 3.6
04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482... 27 4.7
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 27 6.2
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685... 27 8.2
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840... 27 8.2
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 242 bits (592), Expect = 9e-65
Identities = 118/134 (88%), Positives = 124/134 (92%)
Frame = +3
Query: 21 TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 200
T ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 5 TQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 64
Query: 201 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 380
GRRIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 65 GRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 124
Query: 381 LRFIMESGARGCEV 422
LRF+MESGA+GCEV
Sbjct: 125 LRFVMESGAKGCEV 138
>01_06_1329 +
36354340-36354493,36355781-36355942,36356279-36356457,
36356719-36356918,36356938-36357014,36357110-36357111,
36357594-36357701,36357806-36358024,36358167-36358448
Length = 460
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -1
Query: 277 AYSSTDCSGILNRFCTTDVSSRILRPFSPS----TLCVLVAIIM 158
A++ TD +G+L+ CT DV S++ S S TLC+ II+
Sbjct: 332 AHALTDRNGLLSLLCTPDVGSKLGGRASASRYTNTLCITRTIII 375
>10_08_0211 + 15899017-15901392
Length = 791
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 115 TPVWRCVSHPYVQKSLLWPQ 174
T +W +SH +Q+S LWPQ
Sbjct: 696 TQIWAILSHCNIQESNLWPQ 715
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 318 AESLRYKLIGGLAVRRACYGVLR 386
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>01_06_1411 + 37127098-37128279
Length = 393
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 420 LHNREHQIP**NEGHHNTHD 361
LH R HQ P GHH HD
Sbjct: 96 LHLRHHQFPVYRRGHHPDHD 115
>04_03_0746 +
19247529-19247723,19247808-19248000,19248145-19248230,
19248861-19249028,19249445-19249738
Length = 311
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 21 TNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEI 158
T+++ RK + A L E L ELA DG + EV + SEI
Sbjct: 149 TDVNHFRKLMASKAAAANLYETLRMELAGDGIAITEVIPGVVESEI 194
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +3
Query: 81 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 203
+F+T ++ DG++ VE R ++ + +++ +R +G G
Sbjct: 150 QFVTAKVGNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDG 190
>06_03_0311 +
19466258-19466303,19466496-19467087,19468059-19468524,
19470028-19470081,19470112-19470226,19470499-19470605
Length = 459
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -1
Query: 190 STLCVLVAIIMISERMGVTR 131
++LCVL+ I++ISE +GV R
Sbjct: 3 TSLCVLLCILVISEVVGVPR 22
>05_07_0285 +
28982502-28982782,28982888-28982989,28983189-28984006,
28984594-28985050,28985203-28985242
Length = 565
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 338 IDWRSCSPSCVLWCPSFHHGIWCSRL 415
I + CSP V++ P FH ++C L
Sbjct: 175 IQSQCCSPDEVIFGPDFHQSLYCHLL 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,373
Number of Sequences: 37544
Number of extensions: 231440
Number of successful extensions: 535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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