Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M01
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    27   0.70 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   1.6  

>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 201 RRHYL-RISLHDIISEVERTSQFIKMKVFVILCCSLSLSIN 320
           R+HY  +I LH     +E+ SQF   KV      S S+ IN
Sbjct: 228 RKHYPPKICLHSYSGSIEQISQFSAHKVPTEFYYSFSIGIN 268


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 102 HMTYFYLINFYFLTFIFLLCLLPSKSIPTIS 10
           H  +FY +N     F  +LC+L  +++P I+
Sbjct: 240 HWRWFYWMNMIVGGFFVILCVLCPETLPVIN 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,645
Number of Sequences: 5004
Number of extensions: 21280
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)