Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M01
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    29   1.1  
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    27   3.5  

>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 174 SLSAKSKNVHF*ELIILYSTTRPFHMTYFYLINFYFLTFIFLLCL 40
           +L   SK +HF +  ++  T  PF + Y Y I +  L  + L CL
Sbjct: 21  TLEEDSKALHFLQPDLVLFTGAPFALLYLYYIIYSLLCEVTLKCL 65


>02_01_0282 +
           1882844-1883413,1883519-1883644,1883733-1883930,
           1884442-1884666,1884844-1885224,1885282-1885989,
           1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 81  INFYFLTFIFLLCLLPSKSI-PTISSS 4
           + FYF+ FI  LC +PS S+  T+SS+
Sbjct: 692 LGFYFMRFINTLCNIPSVSLFRTLSSN 718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,291,785
Number of Sequences: 37544
Number of extensions: 103410
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)