Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M01
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC026344-1|AAH26344.2|  239|Homo sapiens hypothetical protein FL...    29   4.7  
AK000496-1|BAA91205.1|  239|Homo sapiens protein ( Homo sapiens ...    29   4.7  
BC011878-1|AAH11878.1|  231|Homo sapiens TMEM118 protein protein.      28   8.2  

>BC026344-1|AAH26344.2|  239|Homo sapiens hypothetical protein
           FLJ20489 protein.
          Length = 239

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 111 RPFHMTYFYLINFYFLTFIFL 49
           RPF M  F  ++F+FL F FL
Sbjct: 100 RPFQMNLFSFLSFFFLFFFFL 120


>AK000496-1|BAA91205.1|  239|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20489 fis, clone KAT08285. ).
          Length = 239

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 111 RPFHMTYFYLINFYFLTFIFL 49
           RPF M  F  ++F+FL F FL
Sbjct: 100 RPFQMNLFSFLSFFFLFFFFL 120


>BC011878-1|AAH11878.1|  231|Homo sapiens TMEM118 protein protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 84  LINFYFLTFIFLLCLLPSKSIPTISSSC 1
           L++  ++  +FL C LP  S+  +SSSC
Sbjct: 197 LVSCLYVFLLFLFCHLPHLSLRPVSSSC 224


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,409,213
Number of Sequences: 237096
Number of extensions: 603447
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)