Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_M01
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64846-11|AAG24118.2|  231|Caenorhabditis elegans Serpentine rec...    28   1.8  
U64846-10|AAW88397.1|  341|Caenorhabditis elegans Serpentine rec...    28   1.8  
U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine rece...    28   1.8  
Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    26   7.3  
Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U64846-11|AAG24118.2|  231|Caenorhabditis elegans Serpentine
           receptor, class h protein194, isoform a protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 255 TSQFIKMKVFVILCCSLSLSINVGDFVNGSVGGLLSK 365
           T  FI   +FV+LCC L +S+ VG   + S+  L  K
Sbjct: 84  TYHFIISVIFVVLCC-LEISVFVGYLASNSLEQLKQK 119


>U64846-10|AAW88397.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein194, isoform b protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 255 TSQFIKMKVFVILCCSLSLSINVGDFVNGSVGGLLSK 365
           T  FI   +FV+LCC L +S+ VG   + S+  L  K
Sbjct: 194 TYHFIISVIFVVLCC-LEISVFVGYLASNSLEQLKQK 229


>U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein193 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 234 IISEVERTSQFIKMKVFVILCCSLSLSINVGDFVNGSVGGLLSK 365
           ++SE + T  FI   +FV+LCC + +S+ VG   + S+  L  K
Sbjct: 189 VLSE-DITYHFIISVIFVVLCC-IEISVFVGYLASNSLEQLKQK 230


>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +3

Query: 222 SLHDIISEVERTSQFIKMKVFVILCCSLSLSINVGDFVNG 341
           + H II  +E+T++F+K++  +   CSL+LS N G  ++G
Sbjct: 388 TFHSIIF-LEKTNEFMKVRNILKYLCSLNLS-NYGYSLSG 425


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
          protein F09F9.4 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 69 FLTFIFLLCLLPSKSIPTISS 7
          F  F+FLL LLP  SIP I S
Sbjct: 8  FPLFLFLLLLLPIDSIPIIKS 28


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -2

Query: 231 HVN*FSSSVSVKR*L*TFESLSAKSK--NVHF*ELIILYSTTRPFHMTYFYLINFYFLTF 58
           + N FSS   +        SL+AK+     HF ++ +L+ +  PF + Y+   +  +  F
Sbjct: 111 YTNLFSSLCCISLFFDRLLSLNAKTSYNTKHFSKIFLLFQSISPFGILYWIFYDSVYTGF 170

Query: 57  IFLLCLLPSKS 25
           + +    P+ S
Sbjct: 171 VPMCSYPPATS 181


>Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical
           protein C56A3.3 protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 126 LYSTTRPFHMTYFYLINFYFLTFIFLLCL 40
           L+ T    +  Y Y++    L F FLLC+
Sbjct: 196 LFVTINSVYNIYMYMVLMTLLPFFFLLCI 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,963,707
Number of Sequences: 27780
Number of extensions: 113706
Number of successful extensions: 302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)