Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L24
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 31 0.49
04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371... 30 0.86
08_02_0410 - 16842306-16842950,16844994-16845182 29 1.1
05_01_0151 - 1001851-1001898,1002227-1002311,1003064-1003225,100... 29 1.1
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 2.6
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 28 3.5
10_08_0627 - 19380432-19381126,19381240-19381597 27 4.6
11_04_0323 - 16380329-16380742 27 6.0
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 27 6.0
08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316 27 8.0
01_05_0083 - 17987239-17987317,17988412-17988530,17989195-179893... 27 8.0
01_01_0992 + 7855491-7856236,7856334-7856337 27 8.0
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 30.7 bits (66), Expect = 0.49
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 182 ADEI*LSTGSGREPGYNGGSSPAFRNIADISANKHS 289
ADE+ + G +PG GG P + I DI+ +HS
Sbjct: 1058 ADELQIKMAQGAKPG-EGGELPGHKVIGDIAVTRHS 1092
>04_04_0809 -
28236216-28236679,28236776-28236899,28237049-28237191,
28237697-28237832,28238413-28238888,28238940-28239024
Length = 475
Score = 29.9 bits (64), Expect = 0.86
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 179 SVPSCATPCFGERSRASHTTLTTRDGHQTANHPLTAAG 66
S+ S A G RS +S +++TTR ++N PL AAG
Sbjct: 59 SMSSAAGHHSGMRSSSSMSSITTRSSSSSSNLPLGAAG 96
>08_02_0410 - 16842306-16842950,16844994-16845182
Length = 277
Score = 29.5 bits (63), Expect = 1.1
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = +2
Query: 206 GSGREPGYNGGSSPAFRNIADISANKHSRWHGVRRGGGCRISRDAADPCARRAGARSCAF 385
G GR GG P A +A+ R G GGG R R+ +P A A + A
Sbjct: 113 GEGRRWRREGGE-PGLATEAAAAASASVRGVG---GGGRRRRREGGEPGLAVAAAAASAS 168
Query: 386 AHGE 397
AHGE
Sbjct: 169 AHGE 172
>05_01_0151 -
1001851-1001898,1002227-1002311,1003064-1003225,
1003537-1003672,1004546-1004727,1005599-1005706,
1006133-1006200,1006284-1006292
Length = 265
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 248 LVSCLRCSRAPDRFQSITRSRRRSVPSCATPCFG-ERSRASHTTLTTRDG 102
+V+ RA + Q + R+V C+TPC G RS A+ TTR G
Sbjct: 92 VVTAPETERAANYNQQFSTRMGRTVVQCSTPCGGLNRSMATINRETTRRG 141
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +2
Query: 170 RALTADEI*LSTGSGREPGYNGGSSPAFRNIADISANKHSRWHGVRRGGGCRISRDAADP 349
RA T+ G R P + G + + + RW R GGG S AADP
Sbjct: 8 RASTSSSSSSPPGDARGPEHGGTPRGEVSSKRRLVLRRRQRWR--RLGGGAAASWAAADP 65
Query: 350 CAR 358
AR
Sbjct: 66 RAR 68
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 227 SRAPDRFQSITRSRRRSVPSCATPCFGERSRASHTTL 117
SR+P R +S +RSR RS A+P + + R H L
Sbjct: 68 SRSPRRGRSRSRSRSRSRGRSASPRYPDGKRRRHNDL 104
>10_08_0627 - 19380432-19381126,19381240-19381597
Length = 350
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 24 SVAIVVARAFLHLYTGCG*WVVRGLVSISSSQCSVARSATLAE 152
SVA+ VARA +L+ C VV G V S+ A SA L +
Sbjct: 155 SVALQVARALEYLHDRCEPAVVHGDVKASNVLLDEAMSAKLCD 197
>11_04_0323 - 16380329-16380742
Length = 137
Score = 27.1 bits (57), Expect = 6.0
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +2
Query: 206 GSGREPGYNGGSSPAFRNIADISANKHS-RWHGV----RRGGGCRISRDAADPCARR 361
G G G +GGSS + D + RW + R GG C +RD AD +R
Sbjct: 44 GGGGSAGRSGGSSA---RLGDKGRRRQGGRWRRLGEARRAGGSCSATRDGADDEVQR 97
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 212 RFQSITRSRRRSVPSCATPCFGERSRASHTT 120
R++ + R +PSCA C G+ + +S T+
Sbjct: 79 RYRDVAEMLRDYIPSCAKTCSGDDTLSSSTS 109
>08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316
Length = 127
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 85 WFAVWCPSRVVSVVWLAL 138
W VW P +V+ V WL L
Sbjct: 35 WIPVWYPVKVLFVAWLVL 52
>01_05_0083 -
17987239-17987317,17988412-17988530,17989195-17989304,
17989422-17989617
Length = 167
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 100 CPSRVVSVVWLALLRSPKHGVAHEGTDRRRDLVIDWKRSGARLQRRQLTSLPEHC*HICK 279
C V+V + + PK + + + DL+I S +QR L S+ +C H K
Sbjct: 98 CAQHGVAVETMIKVGDPKEMICQAAEESKVDLLIVGSHSRGPVQRLFLGSVSNYCMHHSK 157
>01_01_0992 + 7855491-7856236,7856334-7856337
Length = 249
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 251 RLVSCLRCSRAPDRFQSITRSRRRSVPSCATPCFGERSRASHTTL 117
R VSCLR A R ++ R+ +C G R +S TTL
Sbjct: 89 REVSCLRRDNAALRAENAALRRQADQCACCAGAAGVRHASSPTTL 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,045,804
Number of Sequences: 37544
Number of extensions: 211165
Number of successful extensions: 859
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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