Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L23
(427 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 240 1e-62
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 237 5e-62
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 217 8e-56
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 193 1e-48
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 192 3e-48
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 187 1e-46
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 180 8e-45
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 180 1e-44
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 165 3e-40
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 111 1e-39
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 148 4e-35
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 136 1e-31
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 103 1e-21
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 100 1e-20
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 99 4e-20
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 96 3e-19
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 95 4e-19
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 93 2e-18
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 93 3e-18
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 86 2e-16
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 85 8e-16
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 83 2e-15
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 82 4e-15
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 81 7e-15
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 80 2e-14
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 79 4e-14
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 79 5e-14
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 77 1e-13
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 75 8e-13
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 70 2e-11
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 69 5e-11
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 57 2e-07
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 57 2e-07
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 41 0.012
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 39 0.037
UniRef50_Q0UQQ4 Cluster: Putative uncharacterized protein; n=1; ... 35 0.81
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 1.1
UniRef50_Q4SVZ2 Cluster: Chromosome undetermined SCAF13705, whol... 34 1.4
UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;... 33 1.9
UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1; Lactob... 33 3.3
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 3.3
UniRef50_A0R135 Cluster: Putative uncharacterized protein; n=1; ... 32 4.3
UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6; ... 32 4.3
UniRef50_A7EU93 Cluster: Putative uncharacterized protein; n=2; ... 32 4.3
UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor; n... 32 4.3
UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1; Lactoba... 32 5.7
UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep... 32 5.7
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 32 5.7
UniRef50_Q4PFF2 Cluster: Putative uncharacterized protein; n=1; ... 31 7.5
UniRef50_Q96XH7 Cluster: Putative uncharacterized protein ST2538... 31 7.5
UniRef50_O65482 Cluster: Putative cysteine-rich receptor-like pr... 31 7.5
UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella ve... 28 7.8
UniRef50_UPI00015BAFB1 Cluster: hypothetical protein Igni_0716; ... 31 9.9
UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|R... 31 9.9
UniRef50_Q65LR0 Cluster: YhgE; n=1; Bacillus licheniformis ATCC ... 31 9.9
UniRef50_A7NPL7 Cluster: Putative uncharacterized protein; n=1; ... 31 9.9
UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1; ... 31 9.9
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 31 9.9
UniRef50_O60293 Cluster: Coiled-coil domain-containing protein 1... 31 9.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 240 bits (587), Expect = 1e-62
Identities = 108/139 (77%), Positives = 123/139 (88%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL
Sbjct: 10 KRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRL 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+KVDGKVRTDPTYPAG+MDV+++EK E FR++YDVKGRF IHRI+ EEAKYKLCKV++
Sbjct: 70 VKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKT 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
G + VP+LVTHDGRT+R
Sbjct: 130 QLGAKGVPFLVTHDGRTIR 148
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 237 bits (581), Expect = 5e-62
Identities = 106/139 (76%), Positives = 122/139 (87%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 10 KRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
IK+DGKVRTD TYPAGFMDV+SI+K E FR+IYD KGRF++HRITPEEAKYKLCKVR++
Sbjct: 70 IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKI 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
G + +P+LVTHD RT+R
Sbjct: 130 FVGTKGIPHLVTHDARTIR 148
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 217 bits (530), Expect = 8e-56
Identities = 98/139 (70%), Positives = 115/139 (82%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 10 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
I+VDGKVRTD TYPAGFMDVVSI K NE FR++YD KGRF +H I EEAK+KLCKVR +
Sbjct: 70 IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
G + +PYL T+DGRT+R
Sbjct: 130 QFGQKGIPYLNTYDGRTIR 148
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 193 bits (470), Expect = 1e-48
Identities = 91/126 (72%), Positives = 104/126 (82%), Gaps = 1/126 (0%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 10 KRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKY-KLCKVRR 365
IK+DGKVRTD TYP GFMDV+SI+K E FR+IYDVKGRF++HRIT EEAK L +R
Sbjct: 70 IKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAKVGALVHLRT 129
Query: 366 VATGPE 383
+ P+
Sbjct: 130 SRSSPQ 135
Score = 45.2 bits (102), Expect = 6e-04
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +3
Query: 339 KYKLCKVRRVATGPESVPYLVTHDGRTLR 425
+YKLCKV+++ G + +P+LVTHD RT+R
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIR 180
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 192 bits (468), Expect = 3e-48
Identities = 83/139 (59%), Positives = 106/139 (76%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R
Sbjct: 10 KRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRT 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
IK+DGK+RTD YP GFMDV+SI + E FR++Y+ K RF + +T E+AK+KLCK+ +
Sbjct: 70 IKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKR 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
G ++PY+VTHDGRT+R
Sbjct: 130 VLGTGAIPYIVTHDGRTIR 148
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 187 bits (455), Expect = 1e-46
Identities = 83/138 (60%), Positives = 105/138 (76%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL
Sbjct: 24 KRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRL 83
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 84 VKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQF 143
Query: 369 ATGPESVPYLVTHDGRTL 422
G + +P++VTHDGRT+
Sbjct: 144 KIGAKGIPHVVTHDGRTI 161
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 180 bits (439), Expect = 8e-45
Identities = 87/139 (62%), Positives = 105/139 (75%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q
Sbjct: 21 KRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWF 79
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
IKVDGK+RTD P MDV+SI+K E F +IY + RF++HRITPEE KYKLCK+R++
Sbjct: 80 IKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKI 139
Query: 369 ATGPESVPYLVTHDGRTLR 425
+ +P+LV HD T+R
Sbjct: 140 FVRAKGIPHLVIHDIHTVR 158
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 180 bits (437), Expect = 1e-44
Identities = 80/139 (57%), Positives = 106/139 (76%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+
Sbjct: 10 KRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNE 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
I VDGKVR D +PAG MDV+SI+ E +RV+YD G F +HRIT +E+ +KLCKV RV
Sbjct: 70 IYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRV 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
+ G + +PY+VTHDGRT+R
Sbjct: 130 SIGSKGIPYIVTHDGRTIR 148
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 165 bits (402), Expect = 3e-40
Identities = 79/139 (56%), Positives = 96/139 (69%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q L
Sbjct: 7 KRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGL 66
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+ VD R D YPAGFMDVV I K + FR++YDVKGRF++ ++ EA+ KL KV +
Sbjct: 67 VHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNL 126
Query: 369 ATGPESVPYLVTHDGRTLR 425
T VP VTHDG +R
Sbjct: 127 YTATGRVPVAVTHDGHRIR 145
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 111 bits (268), Expect(2) = 1e-39
Identities = 51/66 (77%), Positives = 56/66 (84%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
K + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 10 KHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHF 69
Query: 189 IKVDGK 206
IK+DGK
Sbjct: 70 IKMDGK 75
Score = 73.3 bits (172), Expect(2) = 1e-39
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +3
Query: 291 DVKGRFSIHRITPEEAKYKLCKVRRVATGPESVPYLVTHDGRTLR 425
D KGRF++HRITPEEAKYKL KVR++ G + +P+LVTHD RT+R
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIR 120
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 148 bits (359), Expect = 4e-35
Identities = 70/123 (56%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
Frame = +3
Query: 63 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 236
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 237 FMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRVATGPESVPYLVTHDGR 416
MDVV IEK ++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 417 TLR 425
T+R
Sbjct: 258 TIR 260
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 136 bits (330), Expect = 1e-31
Identities = 65/139 (46%), Positives = 93/139 (66%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++
Sbjct: 10 KRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKN 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
IKV+G+VRT+ +P G DVVSIEK E FRV+Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 70 IKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKK 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
+ +PY+V+ G ++R
Sbjct: 130 YEN-QGIPYIVSSCGLSIR 147
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 103 bits (248), Expect = 1e-21
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Frame = +3
Query: 9 KRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+ +
Sbjct: 13 KRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRG 72
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRR 365
I VDG VR +P +P G MDVV I + + +RV+ + R + I+ EEA+ K+C+++
Sbjct: 73 EIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKN 132
Query: 366 VATGPESVPYLVTHDGR 416
+ HDG+
Sbjct: 133 KTYVRGGNLQITMHDGK 149
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 100 bits (240), Expect = 1e-20
Identities = 56/139 (40%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Frame = +3
Query: 9 KRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ +
Sbjct: 5 RRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRG 64
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRR 365
+KVDG VR D +P G MDV+ I E++RV+ D +++ I+ EEA KL +V
Sbjct: 65 YVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEG 124
Query: 366 VATGPESVPYLVTHDGRTL 422
L HDGR L
Sbjct: 125 KTMVKGGRIQLHFHDGRNL 143
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 98.7 bits (235), Expect = 4e-20
Identities = 52/138 (37%), Positives = 74/138 (53%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R+
Sbjct: 13 RRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRV 72
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
I+VDG+V TD +P G MDV+ I + +RV+ D + I PEEA YKL ++RR
Sbjct: 73 IEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRK 132
Query: 369 ATGPESVPYLVTHDGRTL 422
T HDGR +
Sbjct: 133 MTVKNGDLQFTLHDGRNV 150
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 95.9 bits (228), Expect = 3e-19
Identities = 51/136 (37%), Positives = 75/136 (55%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 11 KRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGK 70
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
I +DG R + +PAG MDV+SI + +E + V++D GR S+ + ++ KLCK+
Sbjct: 71 ILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNK 128
Query: 369 ATGPESVPYLVTHDGR 416
L HDGR
Sbjct: 129 TVVKGGNIQLNLHDGR 144
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 95.5 bits (227), Expect = 4e-19
Identities = 48/138 (34%), Positives = 71/138 (51%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 5 RRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGY 64
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C++
Sbjct: 65 VKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDK 124
Query: 369 ATGPESVPYLVTHDGRTL 422
L HDGR +
Sbjct: 125 TMVKAGKIQLNLHDGRNI 142
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 93.1 bits (221), Expect = 2e-18
Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
K L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ +
Sbjct: 11 KALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGH 70
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVI-YDVKGRFSIHRITPEEAKYKLCKVRR 365
+VDG VR D +P GFMDV+ + E FR++ Y VK F +H I EE K ++
Sbjct: 71 FRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIEN 129
Query: 366 VATGPESVPYLVTHDGRTL 422
T L HDGR +
Sbjct: 130 KTTVKGGHVQLNLHDGRNI 148
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 92.7 bits (220), Expect = 3e-18
Identities = 47/138 (34%), Positives = 72/138 (52%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
K APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 11 KTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGN 70
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+ VDG+V D +P GFMD++ I K E++RV+ D KGR +++I EE KLCK+
Sbjct: 71 VLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNK 128
Query: 369 ATGPESVPYLVTHDGRTL 422
+T + HDG+ +
Sbjct: 129 STIKGGKIQVNLHDGKNV 146
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 86.2 bits (204), Expect = 2e-16
Identities = 46/138 (33%), Positives = 70/138 (50%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 7 KRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGK 66
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+ VDGKVR D Y G D +SI N +RV+ + G+F H + +A K+CK+
Sbjct: 67 VLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNK 124
Query: 369 ATGPESVPYLVTHDGRTL 422
L HDG T+
Sbjct: 125 TALRGGKIQLNLHDGTTM 142
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 84.6 bits (200), Expect = 8e-16
Identities = 44/138 (31%), Positives = 72/138 (52%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++ R
Sbjct: 7 KRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQ 66
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+ VDG++ TD G MDV+++ + FR I DV G+ I+ + A KLC+V
Sbjct: 67 VLVDGRIETDLGRGVGLMDVLTV--GEDSFRCILDVNGKLRYRSISDKAAASKLCRVMGK 124
Query: 369 ATGPESVPYLVTHDGRTL 422
+T + + HDGR +
Sbjct: 125 STITDGKTQIHLHDGRNI 142
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 83.4 bits (197), Expect = 2e-15
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Frame = +3
Query: 9 KRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 10 RSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNG 69
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCK-VR 362
+ VDG+ D +P G DV++I + NE +RV+ D +G+ + +I EEA K K +R
Sbjct: 70 KVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIR 129
Query: 363 RVATGPESVPYLVTHDGRT 419
+V+ + Y +T DGRT
Sbjct: 130 KVSVRGGKIQYTLT-DGRT 147
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 82.2 bits (194), Expect = 4e-15
Identities = 50/137 (36%), Positives = 67/137 (48%)
Frame = +3
Query: 12 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 191
R AP + K + R GPHK++E +PL I L+ LK T E +I+ +
Sbjct: 6 RFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKV 65
Query: 192 KVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRVA 371
VDGKVR D YP G MDVV I A+ R+I D + I+ E+AKYK ++
Sbjct: 66 LVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKT 125
Query: 372 TGPESVPYLVTHDGRTL 422
T V L DGR +
Sbjct: 126 TLKSGVLQLNLEDGRNI 142
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 81.4 bits (192), Expect = 7e-15
Identities = 42/139 (30%), Positives = 70/139 (50%)
Frame = +3
Query: 6 RKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
+KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 4 QKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEG 63
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRR 365
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 64 KVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINN 122
Query: 366 VATGPESVPYLVTHDGRTL 422
T L +DG +
Sbjct: 123 KTTVKGGKIQLNLNDGTNI 141
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 79.8 bits (188), Expect = 2e-14
Identities = 46/137 (33%), Positives = 70/137 (51%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+KVDGK + + GFMDV+ I E +RV+Y+ +G + + T E A KL KVR
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 369 ATGPESVPYLVTHDGRT 419
P + L THDGRT
Sbjct: 124 VIAPGNRIQLGTHDGRT 140
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 79.0 bits (186), Expect = 4e-14
Identities = 44/122 (36%), Positives = 64/122 (52%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+ QR
Sbjct: 6 KRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRD 64
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+ V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK+R
Sbjct: 65 VLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNK 124
Query: 369 AT 374
T
Sbjct: 125 TT 126
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 78.6 bits (185), Expect = 5e-14
Identities = 40/122 (32%), Positives = 67/122 (54%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+ ++G + TD D++S K ++ + ++ D KGR + + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 369 AT 374
T
Sbjct: 124 TT 125
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 77.4 bits (182), Expect = 1e-13
Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCK-VRR 365
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K V++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 366 VATGPESVPYLVTHDGRTL 422
G + L HDG+T+
Sbjct: 127 TIIGTGKI-QLGFHDGKTI 144
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 74.5 bits (175), Expect = 8e-13
Identities = 38/136 (27%), Positives = 68/136 (50%)
Frame = +3
Query: 6 RKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
+KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 5 QKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEG 64
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRR 365
+ VDG R D +P G MD+++I N +RV+ D K R ++++ A KLC++
Sbjct: 65 NVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEG 123
Query: 366 VATGPESVPYLVTHDG 413
+ E + +DG
Sbjct: 124 KTSIKEGKIQMRLNDG 139
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 70.1 bits (164), Expect = 2e-11
Identities = 40/139 (28%), Positives = 67/139 (48%)
Frame = +3
Query: 6 RKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
+KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 5 QKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNED 63
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRR 365
+ ++GK +D P G D+++ + E +RV GR ++ I P+ A+ KL K+
Sbjct: 64 NVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVT 123
Query: 366 VATGPESVPYLVTHDGRTL 422
L HDG TL
Sbjct: 124 KTHVSGGDVQLGLHDGETL 142
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 68.5 bits (160), Expect = 5e-11
Identities = 36/140 (25%), Positives = 67/140 (47%)
Frame = +3
Query: 6 RKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 185
+KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 9 QKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTG 68
Query: 186 LIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRR 365
+ V+GK +P MD +S AN+ +RV+ G+ +++ I E K+CKV +
Sbjct: 69 FLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIK 128
Query: 366 VATGPESVPYLVTHDGRTLR 425
+ ++T D R L+
Sbjct: 129 IINASSKNKIIITDDLRELK 148
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 56.8 bits (131), Expect = 2e-07
Identities = 36/138 (26%), Positives = 58/138 (42%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 11 KRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGN 70
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
++VDG RT + G MDVV + +++R++ +I E K+C+V
Sbjct: 71 VEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSK 130
Query: 369 ATGPESVPYLVTHDGRTL 422
+ + HDGR+L
Sbjct: 131 TSISGGRTQIGFHDGRSL 148
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 56.8 bits (131), Expect = 2e-07
Identities = 41/138 (29%), Positives = 64/138 (46%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+ VDGKV + GFMD +++ N+ + V YD KG+ I E KL +V+
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV-SGND-YLVSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 369 ATGPESVPYLVTHDGRTL 422
+ HDG T+
Sbjct: 124 TYVKGGRIQISFHDGSTM 141
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 40.7 bits (91), Expect = 0.012
Identities = 25/58 (43%), Positives = 30/58 (51%)
Frame = -3
Query: 416 APVVRHQVRHALGAGRDAPHLAQLVLGFFRCDTVDTEPSFHIIYYTE*LICFLNGYNV 243
A VV+ RHAL APHLAQLVL F D V E S ++ E I +G +V
Sbjct: 136 AAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 39.1 bits (87), Expect = 0.037
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +3
Query: 75 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 254
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 255 IEKANELFRVIYDVKG 302
IE +++ ++ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_Q0UQQ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 790
Score = 34.7 bits (76), Expect = 0.81
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -1
Query: 349 SLYLASSGVIRWILNLPFTSYITRNNSFAFSMDT 248
+LYLA+S V+ W + P +Y T++N ++S DT
Sbjct: 171 TLYLATSPVVPWDRSFPTAAYSTQHNETSYSFDT 204
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 34.3 bits (75), Expect = 1.1
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +3
Query: 33 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 212
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 213 TDPT-YPAGFMDVVSIEKANELFRVIYDVKG 302
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_Q4SVZ2 Cluster: Chromosome undetermined SCAF13705, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF13705,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1803
Score = 33.9 bits (74), Expect = 1.4
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = -1
Query: 427 YRSVRPSCVTRYGTLSGPVATRRTLHSLYLASSGVIRWILNLPFTSYITRN-NSFAFSMD 251
+ S++PS V GT SGP +L S+ S ++ LN F+S T SF+FS
Sbjct: 282 FSSIKPSTVVPAGTASGP-----SLQSIAAPSPPAVKLNLNERFSSLETPTPQSFSFS-- 334
Query: 250 TTSINPAGYVGSVRTFPS-TLMRRCFTILSTSLP 152
+ IN + T PS T R I+ TS P
Sbjct: 335 -SPINKPSSISISLTTPSLTTTRPLPAIVQTSAP 367
>UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;
Moritella sp. PE36|Rep: Hydrolase, alpha/beta fold
family - Moritella sp. PE36
Length = 301
Score = 33.5 bits (73), Expect = 1.9
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +3
Query: 21 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 200
+P+ W LD + G+ + K+ LP+ IF + L G VL + KQ ++
Sbjct: 206 SPQFW-LDFMSGLITISQKSEIAKIPNQLPIYIFSGEQDPVGLQGKGVLAL-KQHIVNSG 263
Query: 201 GKVRTDPTYPAGFMDVVSIEKANELFRVIYD 293
+ YP G ++++ ANE+F + D
Sbjct: 264 CEQVQYKLYPGGRHEMLNESNANEVFNDVTD 294
>UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1;
Lactobacillus casei ATCC 334|Rep: Predicted membrane
protein - Lactobacillus casei (strain ATCC 334)
Length = 981
Score = 32.7 bits (71), Expect = 3.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 220 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSL 89
GS TFP L + + I+ LP+S + FR ITSG S ++
Sbjct: 891 GSGGTFPMELTNQFYNIIHPFLPMSYSIMNFRNAITSGIASNTV 934
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 3.3
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 36 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 197
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_A0R135 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium smegmatis str. MC2 155|Rep: Putative
uncharacterized protein - Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155)
Length = 312
Score = 32.3 bits (70), Expect = 4.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 352 ARCGASRPAPRACRTW*RTTGAR 420
+R G SRP+ CR W RTTG+R
Sbjct: 3 SRAGCSRPSCCGCRPWIRTTGSR 25
>UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 1760
Score = 32.3 bits (70), Expect = 4.3
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +3
Query: 207 VRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRVA 371
+RTDP+Y + V+ +++ L +I++++ FS + + K +LC V+
Sbjct: 1054 LRTDPSYHSAPSAVIKLQQLIRLEEIIFNMRNNFSNELLKLRDEKERLCGTLNVS 1108
>UniRef50_A7EU93 Cluster: Putative uncharacterized protein; n=2;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1096
Score = 32.3 bits (70), Expect = 4.3
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = -1
Query: 274 NSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPV-SAYLSRFRRKITSGKHS 98
+S AFS D T + Y ++R + + T+ S V S S K+ SG
Sbjct: 948 SSVAFSPDGTKVASGSYDQTIRLWDTITGESLQTLEGHSRSVGSVAFSPDGTKVASGSRD 1007
Query: 97 RS--LWGPVEGRGAYTPPSLSNIHALGAFKRFLV 2
+ LW + G + + S + A AF+R+ +
Sbjct: 1008 ETIRLWDTITGESLQSLKNHSGLEASSAFERYFI 1041
>UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor;
n=10; Euteleostomi|Rep: Thioredoxin, mitochondrial
precursor - Bos taurus (Bovine)
Length = 166
Score = 32.3 bits (70), Expect = 4.3
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 139 LSRFRRKITSGKHSRSLWGPVEGRGAYTP 53
L RF I SGK S+S W PV R TP
Sbjct: 7 LRRFLTSIISGKPSQSRWAPVASRALQTP 35
>UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1;
Lactobacillus plantarum|Rep: Integral membrane protein -
Lactobacillus plantarum
Length = 1106
Score = 31.9 bits (69), Expect = 5.7
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -1
Query: 220 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 41
GS TFP + + F + LP++ + FR+ +T G S W + T SL
Sbjct: 1019 GSGGTFPMEITNKFFNAIHPYLPLTYSIQAFRQALTGGWGSGIFWSSIVVLAGITIVSLG 1078
Query: 40 NIHALGAF 17
+ A F
Sbjct: 1079 LLWASMVF 1086
>UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep:
POM121-like protein 2 - Mus musculus (Mouse)
Length = 972
Score = 31.9 bits (69), Expect = 5.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 238 NPAGYVGSV-RTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPV 77
NP +V R FP M+R + SLP + S +R I S +H R+ W PV
Sbjct: 66 NPTAFVSEAWRRFP---MKRPQNPIMGSLPSDWWESYLKRNIWSLRHPRATWSPV 117
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 31.9 bits (69), Expect = 5.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 222 TYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
+YPA + D I + E+FR++ + S RI + K C + RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
>UniRef50_Q4PFF2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 2649
Score = 31.5 bits (68), Expect = 7.5
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 421 SVRPSCVTRYGTLSGPVATRRTLHSLYLASSGVIRWILNLPFTSYITRNNS 269
S+ S + R T S P+A R + Y+A SGV+ W LN P S+ +N +
Sbjct: 1235 SLAGSPLFRNSTFSPPLAGRS---ARYMAFSGVMEWSLNAPTPSWEDQNQN 1282
>UniRef50_Q96XH7 Cluster: Putative uncharacterized protein ST2538;
n=1; Sulfolobus tokodaii|Rep: Putative uncharacterized
protein ST2538 - Sulfolobus tokodaii
Length = 146
Score = 31.5 bits (68), Expect = 7.5
Identities = 19/86 (22%), Positives = 41/86 (47%)
Frame = -1
Query: 346 LYLASSGVIRWILNLPFTSYITRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTIL 167
LY++ ++ IL +P T +++ + S + T + Y ++ + L+ R +T
Sbjct: 4 LYISLFLIVLGILLVPITYFVSNEVIYKSSFNRTLSDLGAYTINIPKYQGELVVRGYTNS 63
Query: 166 STSLPVSAYLSRFRRKITSGKHSRSL 89
+ ++ V YL + + +G S SL
Sbjct: 64 TVTIEVLKYLELIKSEEVNGNFSFSL 89
>UniRef50_O65482 Cluster: Putative cysteine-rich receptor-like
protein kinase 23 precursor; n=1; Arabidopsis
thaliana|Rep: Putative cysteine-rich receptor-like
protein kinase 23 precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 830
Score = 31.5 bits (68), Expect = 7.5
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 208 TFP--STLMRRCFTILST-SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 53
TFP ST M T+LST S P ++Y + F+ T+GKH + G RG +P
Sbjct: 151 TFPRSSTYMTNLITLLSTLSSPSASYSTGFQNA-TAGKHPDRVTGLFNCRGDVSP 204
>UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1072
Score = 27.9 bits (59), Expect(2) = 7.8
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 66 PRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 230
P PST PH L+ +PL + + ++ L L+++ + PT P
Sbjct: 842 PHPSTSPHSLQVLIPLQVLIPLQVLIPLQVLTTLQVLTSLQVLTPSTSPRPPTSP 896
Score = 22.2 bits (45), Expect(2) = 7.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 63 APRPSTGPH 89
+P PSTGPH
Sbjct: 829 SPHPSTGPH 837
>UniRef50_UPI00015BAFB1 Cluster: hypothetical protein Igni_0716;
n=1; Ignicoccus hospitalis KIN4/I|Rep: hypothetical
protein Igni_0716 - Ignicoccus hospitalis KIN4/I
Length = 508
Score = 31.1 bits (67), Expect = 9.9
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 105 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRV 284
+PLV+ L L+ + N LK+V + ++ + + T YP G ++ E F
Sbjct: 206 VPLVVSL---LRLIASYNPALKVVTELILNLPVRASTGVAYPYGKVEDARGEPVVHAFIY 262
Query: 285 IYDVKGRFSIHRITPE 332
D GRF ++ + E
Sbjct: 263 FEDRNGRFGLYPLDGE 278
>UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|Rep:
Pseudouridine synthase - Thermotoga maritima
Length = 239
Score = 31.1 bits (67), Expect = 9.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 150 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 260
T EV K++KQ + V+G+V DP +P D V+++
Sbjct: 14 TRKEVKKLIKQGRVTVNGRVVLDPGHPVLENDAVALD 50
>UniRef50_Q65LR0 Cluster: YhgE; n=1; Bacillus licheniformis ATCC
14580|Rep: YhgE - Bacillus licheniformis (strain DSM 13
/ ATCC 14580)
Length = 720
Score = 31.1 bits (67), Expect = 9.9
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = -1
Query: 220 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHS 98
GS TFP L+ + F ++ ++LP++ ++ +R I+SG ++
Sbjct: 642 GSGGTFPLALVPKFFQVIHSALPMTYSIAGYRAVISSGDYA 682
>UniRef50_A7NPL7 Cluster: Putative uncharacterized protein; n=1;
Roseiflexus castenholzii DSM 13941|Rep: Putative
uncharacterized protein - Roseiflexus castenholzii DSM
13941
Length = 123
Score = 31.1 bits (67), Expect = 9.9
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 RKQMSYSV*YMM*KEGSVSTVSHLKKPSTS--CARCGASRPAPRACRT 396
R+Q + Y S S+VS+L PS + CAR A+RPAP AC T
Sbjct: 11 RRQGVIQLQYATMLANSHSSVSYLTAPSPAGACARGSATRPAP-ACHT 57
>UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 105
Score = 31.1 bits (67), Expect = 9.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 356 GAARRDRPRERAVPGDARRAHAPV 427
G RRDRP+ER P RRA P+
Sbjct: 70 GGDRRDRPQERLAPRSLRRAERPL 93
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 31.1 bits (67), Expect = 9.9
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 72 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 248
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 249 VSIEKANELFRVIYDVKGR 305
+ E+ +E + IYD+ R
Sbjct: 375 IPKEELSEKEKEIYDLIAR 393
>UniRef50_O60293 Cluster: Coiled-coil domain-containing protein 131;
n=26; Amniota|Rep: Coiled-coil domain-containing protein
131 - Homo sapiens (Human)
Length = 1989
Score = 31.1 bits (67), Expect = 9.9
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +3
Query: 63 APRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 230
A +P P +E PL + +++Y L E+ KQRLIK D +++T + P
Sbjct: 748 ASKPKVPPKSEKENDPLRTPEALPEEKKIEYRLLKEEIANREKQRLIKSD-QLKTSSSSP 806
Query: 231 AGF-MDVVSIEKANELFRVIYDVKGRFSIHRI 323
A +++ I + + + + D + + HRI
Sbjct: 807 ANSDVEIDGIGRIAMVTKQVTDAESKLKKHRI 838
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,164,142
Number of Sequences: 1657284
Number of extensions: 9203640
Number of successful extensions: 30731
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 29774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30719
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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