Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L23
(427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 226 1e-60
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 225 2e-60
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 225 3e-60
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 0.92
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 4.9
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 4.9
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 25 6.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.5
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 8.6
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 8.6
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 8.6
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 8.6
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 226 bits (553), Expect = 1e-60
Identities = 99/139 (71%), Positives = 117/139 (84%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRL
Sbjct: 10 KRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRL 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
IKVDGKVRTD T+P GFMDV+S+EK E FR++YD+KGRF++HRIT EEAKYKLCKV+RV
Sbjct: 70 IKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
G + VP+LVTHDGRT+R
Sbjct: 130 QLGAKGVPFLVTHDGRTIR 148
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 225 bits (550), Expect = 2e-60
Identities = 98/139 (70%), Positives = 117/139 (84%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRL
Sbjct: 10 KRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRL 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
IKVDGKVRTD T+P GFMDV+S++K E FR++YD+KGRF++HRIT EEAKYKLCKV+RV
Sbjct: 70 IKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
G + VP+LVTHDGRT+R
Sbjct: 130 QLGAKGVPFLVTHDGRTIR 148
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 225 bits (549), Expect = 3e-60
Identities = 98/139 (70%), Positives = 117/139 (84%)
Frame = +3
Query: 9 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
KR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRL
Sbjct: 10 KRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRL 69
Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
I+VDGKVRTD T+P GFMDV+S+EK E FR++YD+KGRF++HRIT EEAKYKLCKV+RV
Sbjct: 70 IQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129
Query: 369 ATGPESVPYLVTHDGRTLR 425
G + VP+LVTHDGRT+R
Sbjct: 130 QLGAKGVPFLVTHDGRTIR 148
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.5 bits (58), Expect = 0.92
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 307 NLPFTSYITRNNSFAFSMDTTSINPAGYVGSVR--TFPSTLMRRCFTILSTS 158
+LP ++T +F ++ T+ G + S + T S ++ CFTI+STS
Sbjct: 605 SLPELDFLTSVFNFPLALRNTATRILGIILSTKDSTRISEVLSSCFTIISTS 656
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 111 LVIFLRNRLKYALTGNEVLKIV 176
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 4.9
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 286 ITRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 110
I RN S+ MD + YV + + S + C + ++LP S YLS R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 316 WILNLPFTSYITRNNSFAF 260
W LNL +TS+IT F F
Sbjct: 553 WYLNLRYTSFITPQLCFEF 571
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 139 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 41
L R +R + + S+W +E A+ PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 6.5
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 243 DVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRVATGPESVPYL-VTHDGRT 419
+V S+EK N++F + Y+V + + + K+ ++ ++ ++VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 420 LR 425
L+
Sbjct: 1778 LK 1779
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 96 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 197
+ECLP F +N+L Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 8.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 33 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 179
+ L KLG V P+ T H LR+ + L + + ++ +EV+ I+K
Sbjct: 277 YKLKKLGVVAEPQ-LTSIHSLRDDWSFLTLLSDGITDVVSDDEVVDIIK 324
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 114 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 230
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 221 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 117
G P P+ F + L +K G +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,423
Number of Sequences: 5004
Number of extensions: 36346
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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