Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L23
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496...   209   6e-55
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31...   206   4e-54
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972...   206   4e-54
01_01_1101 + 8731427-8732938                                           29   1.2  
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    28   2.7  
04_04_0950 + 29609484-29611025                                         27   4.8  
01_01_1127 + 8930593-8932681,8932812-8933401                           27   4.8  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     27   6.3  
08_02_0803 + 21390525-21391066,21391799-21391958                       27   8.3  
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    27   8.3  

>05_04_0058 +
           17548945-17548947,17549234-17549281,17549618-17549695,
           17549952-17550132,17550223-17550320,17550827-17551258
          Length = 279

 Score =  209 bits (511), Expect = 6e-55
 Identities = 94/139 (67%), Positives = 112/139 (80%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           KRLNAP  WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR 
Sbjct: 26  KRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRH 85

Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
           + VDGKVRTD TYPAGFMDVVSI K  E FR++YD KGRF +H I  E+AK+KLCKVR V
Sbjct: 86  VMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSV 145

Query: 369 ATGPESVPYLVTHDGRTLR 425
             G + +P+L T+DGRT+R
Sbjct: 146 QFGQKGIPFLNTNDGRTIR 164


>02_01_0047 -
           316960-317397,317647-317744,317837-318017,318122-318199,
           319023-319025
          Length = 265

 Score =  206 bits (504), Expect = 4e-54
 Identities = 91/139 (65%), Positives = 112/139 (80%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT  EV+ I+ QR 
Sbjct: 10  KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH 69

Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
           + VDGKVRTD TYPAGFMDV+SI K  E +R++YD KGRF +  +  E+AK+KLCKVR V
Sbjct: 70  VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129

Query: 369 ATGPESVPYLVTHDGRTLR 425
             G + +PYL T+DGRT+R
Sbjct: 130 QFGQKGIPYLNTYDGRTIR 148


>01_03_0277 +
           14496298-14496300,14496875-14496952,14497061-14497241,
           14497348-14497445,14497542-14497979
          Length = 265

 Score =  206 bits (504), Expect = 4e-54
 Identities = 91/139 (65%), Positives = 112/139 (80%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT  EV+ I+ QR 
Sbjct: 10  KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH 69

Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
           + VDGKVRTD TYPAGFMDV+SI K  E +R++YD KGRF +  +  E+AK+KLCKVR V
Sbjct: 70  VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129

Query: 369 ATGPESVPYLVTHDGRTLR 425
             G + +PYL T+DGRT+R
Sbjct: 130 QFGQKGIPYLNTYDGRTIR 148


>01_01_1101 + 8731427-8732938
          Length = 503

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 167 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 33
           +HL+     L P     H R A A L+ + R P R HAA LV+  HP
Sbjct: 29  RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 213 TDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRVATGP 380
           T P +        S E A   + +IYD++G  ++  + P++A   L  +  V T P
Sbjct: 126 TAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181


>04_04_0950 + 29609484-29611025
          Length = 513

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 181 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 53
           CF  +  +  V+  + R +RK  + K +  L GP +G   Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/80 (18%), Positives = 36/80 (45%)
 Frame = +3

Query: 120 FLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVK 299
           +L N     +T +  +  +K+  + +   ++T+P +P G++    +E+     +V   + 
Sbjct: 269 YLTNLKSMKITSDAEISDIKKARLLLKSVIQTNPKHPPGWIAAARLEEVAGKLQVAQQLI 328

Query: 300 GRFSIHRITPEEAKYKLCKV 359
            R      T E+   K C++
Sbjct: 329 QRGCEECPTNEDVWLKACRL 348


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -1

Query: 91  LWGPVEGRGAYTPPSLSNIHALGAFKR 11
           L G   G G Y PPSLSN   + AFKR
Sbjct: 51  LLGHGHGVGVYYPPSLSNA-LVAAFKR 76


>08_02_0803 + 21390525-21391066,21391799-21391958
          Length = 233

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 157 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 50
           LP   Y+S  RR   S +  RSL   +  R A +PP
Sbjct: 24  LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59


>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 87  HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 227
           H    CL PL++ +RN L   +  + +LKI  +R +++  K+R    Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,897
Number of Sequences: 37544
Number of extensions: 263724
Number of successful extensions: 858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)