Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L23
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   189   8e-49
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   1.4  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   5.6  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   5.6  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U22831-14|AAN84802.1|  334|Caenorhabditis elegans G-protein-link...    26   9.8  
U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-link...    26   9.8  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    26   9.8  
U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-link...    26   9.8  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    26   9.8  
AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-lin...    26   9.8  
AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-lin...    26   9.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  189 bits (460), Expect = 8e-49
 Identities = 88/139 (63%), Positives = 106/139 (76%)
 Frame = +3

Query: 9   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 188
           KRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR+
Sbjct: 9   KRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRV 68

Query: 189 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRFSIHRITPEEAKYKLCKVRRV 368
           ++VDGKVRT   +P GFMDVV+IE+ NE FR++YD KGR+ +HRI   EA +KLCKV+ V
Sbjct: 69  VRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSV 128

Query: 369 ATGPESVPYLVTHDGRTLR 425
            T  + VP L T DGRT+R
Sbjct: 129 RTVNKGVPVLTTTDGRTIR 147


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -3

Query: 206 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 114
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -3

Query: 206 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 114
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 295 TSYITRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMR 185
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 313 STVSHLK-KPSTSCARCGASRP 375
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 314 PPYHT*RSQVQAVQGAARRDRPRERAVPGDARRAHAP 424
           PP    RS  Q+   A +R + R ++ P  ARR  +P
Sbjct: 315 PPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSP 351


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 260 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 165
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 260 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 165
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 337 PSTSCARCGASRPAPRACRTW*RTTGARSG 426
           PSTS   C AS     +CR+  R T + SG
Sbjct: 22  PSTSSCGCQASSSCANSCRSTCRPTCSSSG 51


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 300 GRFSIHRITPEEAKYKLCKVRRVATGPESVP-----YLVTHDGRTLR 425
           G+  + R+T  E  Y+ CK+++ A   + VP     Y+V H  R ++
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQ 348


>U22831-14|AAN84802.1|  334|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform e protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 VLGFFRCDTVDTEPSFHIIYYTE*LICFLN 255
           + GF  C+T    PSF+ +Y     +C++N
Sbjct: 277 IYGF--CETCKASPSFNTLYTISYYLCYMN 304


>U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform b protein.
          Length = 614

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 VLGFFRCDTVDTEPSFHIIYYTE*LICFLN 255
           + GF  C+T    PSF+ +Y     +C++N
Sbjct: 557 IYGF--CETCKASPSFNTLYTISYYLCYMN 584


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 VLGFFRCDTVDTEPSFHIIYYTE*LICFLN 255
           + GF  C+T    PSF+ +Y     +C++N
Sbjct: 570 IYGF--CETCKASPSFNTLYTISYYLCYMN 597


>U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform c protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 VLGFFRCDTVDTEPSFHIIYYTE*LICFLN 255
           + GF  C+T    PSF+ +Y     +C++N
Sbjct: 610 IYGF--CETCKASPSFNTLYTISYYLCYMN 637


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 VLGFFRCDTVDTEPSFHIIYYTE*LICFLN 255
           + GF  C+T    PSF+ +Y     +C++N
Sbjct: 570 IYGF--CETCKASPSFNTLYTISYYLCYMN 597


>AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2a protein.
          Length = 664

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 VLGFFRCDTVDTEPSFHIIYYTE*LICFLN 255
           + GF  C+T    PSF+ +Y     +C++N
Sbjct: 607 IYGF--CETCKASPSFNTLYTISYYLCYMN 634


>AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-2c protein.
          Length = 614

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 VLGFFRCDTVDTEPSFHIIYYTE*LICFLN 255
           + GF  C+T    PSF+ +Y     +C++N
Sbjct: 557 IYGF--CETCKASPSFNTLYTISYYLCYMN 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,170,361
Number of Sequences: 27780
Number of extensions: 207233
Number of successful extensions: 630
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)