Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L23
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   4.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.6  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   7.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 132 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 233
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 174 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYD 293
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 KGRFSIHRITPEEAKYKLCKVRRVATGPESV 389
           K +  IHR  P ++     +V+R    PE V
Sbjct: 130 KIKLEIHRDLPGKSTTTTAEVKRDTINPEDV 160


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 150 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRVIYDVKGRF 308
           T +++    + R+ ++   VRT    P GF D+V  +K  E   +   +  R+
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMPIPNRY 784


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 KGRFSIHRITPEEAKYKLCKVRRVATGPESV 389
           K +  IHR  P ++     +V+R    PE V
Sbjct: 119 KIKLEIHRDLPGKSTITTVEVKRDIINPEDV 149


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 297 KGRFSIHRITPEEAKYKLCKVRRVATGPESV 389
           K +  IHR  P ++     +V+R    PE V
Sbjct: 130 KIKLEIHRDLPGKSTTTTVEVKRDTINPEDV 160


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 297 KGRFSIHRITPEEAKYKLCKVRRVATGPESV-PYLVTHDG 413
           K +  IHR  P ++     +V+R    PE V P   T +G
Sbjct: 130 KIKLEIHRDLPGKSTTTTVEVKRDIINPEDVIPIRRTGEG 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,596
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)