Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L21
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 33 0.069
07_03_0007 - 12271560-12272207 29 1.1
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 29 1.5
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 29 1.5
04_03_0119 + 11485753-11486202 27 4.5
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 27 4.5
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 27 4.5
02_02_0263 - 8400488-8400913,8401011-8401481,8401581-8401843,840... 27 4.5
07_03_0141 + 14249788-14249992,14250240-14250295 26 7.9
07_03_0140 + 14238645-14238849,14239081-14239163 26 7.9
01_05_0091 + 18048595-18050559 26 7.9
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 33.1 bits (72), Expect = 0.069
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +2
Query: 110 ENRHTTEQDSRPLQSSRLPGIE--ELTLGLKQKLHLQARARAAPYYIRKQEPVDLVERLL 283
EN T+E +S L + P + E + ++ +L+ + RAR ++ PV+L
Sbjct: 321 ENTDTSEGESSELICTERPDPDSGEASQRIRDRLNWRKRARKKLVFL--SSPVEL----- 373
Query: 284 EQRALVAEAVRRLQEKKQPCPEISVDS 364
+ + VAE+ R LQE K+ PE+++ S
Sbjct: 374 -KVSAVAESERHLQESKEMSPEVNIVS 399
>07_03_0007 - 12271560-12272207
Length = 215
Score = 29.1 bits (62), Expect = 1.1
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +2
Query: 95 EKSRYENRHTTEQDSRPLQSSRLPGIEELTLGLKQKLHLQARARAAPYY---IRKQ-EPV 262
++SR+ + + R +QS R P L L +A R AP ++K+ E V
Sbjct: 64 DRSRFSDHSARDAALRRIQSWRRPA------ALPDVLPAEAEPRPAPEPGEPVKKEPEAV 117
Query: 263 DLVERLLEQRALVAEAVRRLQEKKQPCPE 349
D+ + +R VAE +RR E P PE
Sbjct: 118 DVAGKEELERMSVAEVLRREVELVHPWPE 146
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/45 (22%), Positives = 27/45 (60%)
Frame = +2
Query: 176 ELTLGLKQKLHLQARARAAPYYIRKQEPVDLVERLLEQRALVAEA 310
E+ +GL+++ H+ +A ++ L+++L+EQ++ A++
Sbjct: 93 EIVMGLEEEFHISVEESSAQSIATVEDAAALIDKLVEQKSAEAKS 137
>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 28.7 bits (61), Expect = 1.5
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +2
Query: 92 KEKSRYENRHTTEQDSRPLQSSRLPGIEELTL--GLKQKLHLQARARAAPYYIRKQEPVD 265
KE ++ H E R L + E+ L G K + + P +KQ P
Sbjct: 965 KEVKVTQSLHDRESKGRILGNQNEIHKSEVNLDKGWKPSNIVTSMTSFIPLVKQKQRPTT 1024
Query: 266 L-VERLLEQRAL-VAEAVRRLQEKKQ 337
+ V+R + +AL VAEAV+R ++KKQ
Sbjct: 1025 VCVKRDVRVKALEVAEAVKRREQKKQ 1050
>04_03_0119 + 11485753-11486202
Length = 149
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 181 YPWPETKASPP--SSGPCCTLLH*KARTCRSRRK 276
YPW + ASPP S+ CT L CR R+
Sbjct: 72 YPWCSSPASPPPSSATSTCTALSPGTSCCRRCRR 105
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 198 CFRPRVSSSIPGNLLDCSGRLSCSVV*RFSYLD 100
C+ P S + CS R++CS V F Y D
Sbjct: 505 CYAPEHQSGRVPFYVTCSNRIACSEVREFEYRD 537
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 27.1 bits (57), Expect = 4.5
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 95 EKSRYENRHTTEQDSRPLQSSRLPGIEELTLGLKQKLHLQARARAAPYYIRKQE-PVD-- 265
+ SRYE+ ++ ++ R+ E + + + + + RA I+++ D
Sbjct: 160 QMSRYEDELARKRMQADHEAQRVRNQELVKMQEESAIRQEQMRRAIEEQIQEERRKTDRA 219
Query: 266 --LVERLLEQRALVAEAVRRLQEKKQ 337
+VE+ +EQ ++AEA R++ KKQ
Sbjct: 220 KAIVEKEIEQEKILAEANARIKLKKQ 245
>02_02_0263 -
8400488-8400913,8401011-8401481,8401581-8401843,
8401964-8402225
Length = 473
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 92 KEKSRYENRHTTEQDSRPLQSSRLPGIEELTLGLKQKLHLQARARAAPY 238
+E+++Y+ +E +P SSR G+EE +K +L+++ +RA Y
Sbjct: 255 QEQAQYQEVQYSE---KPQTSSRWNGLEENLCTIKTRLNIENPSRADSY 300
>07_03_0141 + 14249788-14249992,14250240-14250295
Length = 86
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 336 CFFSCNLRTASATRARCSNSLSTRSTGSCF 247
C +L SAT A+C +S+R+ CF
Sbjct: 14 CLVILSLTVDSATAAQCGCCISSRAKACCF 43
>07_03_0140 + 14238645-14238849,14239081-14239163
Length = 95
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 336 CFFSCNLRTASATRARCSNSLSTRSTGSCF 247
C +L SAT A+C +S+R+ CF
Sbjct: 14 CLVILSLTVDSATAAQCGCCISSRAKACCF 43
>01_05_0091 + 18048595-18050559
Length = 654
Score = 26.2 bits (55), Expect = 7.9
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +2
Query: 131 QDSRP--LQSSRLPGIEELTLGLKQKLH-LQARARAAPYYIR-KQEPVDLVERLLEQR-A 295
QD+RP + SSR I+ LG L A A + Y+ ++PV+LVE LL+ R +
Sbjct: 170 QDARPELVHSSRTLLIDPALLGNHLLCPVLSAAAWVSGEYVNFTKDPVELVEALLQPRIS 229
Query: 296 LVAEAVR 316
L+ +VR
Sbjct: 230 LLPMSVR 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,764,437
Number of Sequences: 37544
Number of extensions: 177677
Number of successful extensions: 528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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