Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L21
(364 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 29 1.3
U55365-7|AAN84869.1| 133|Caenorhabditis elegans Nuclear hormone... 29 1.3
U55365-6|AAN84868.1| 338|Caenorhabditis elegans Nuclear hormone... 29 1.3
U39995-4|AAF99993.2| 675|Caenorhabditis elegans Potassium chann... 29 1.3
AY204182-1|AAO39186.1| 338|Caenorhabditis elegans nuclear recep... 29 1.3
AF273838-1|AAG15185.1| 273|Caenorhabditis elegans nuclear recep... 29 1.3
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 29 1.3
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 27 3.0
Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 26 9.3
U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone... 26 9.3
AC024818-4|AAF60782.5| 457|Caenorhabditis elegans Hypothetical ... 26 9.3
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 134 DSRPLQSSRLPGIEELTLGLKQKLHLQARARAAPYYIRKQEPVDLVERLLEQRALVAEAV 313
D P L +E L+ K+ + AA +E + ++ E RAL A+ +
Sbjct: 1063 DRNPNDVKSLQNLERDLKPLEDKIAALEKLAAAVKKDHPEEAAAIERKIAELRALHADLL 1122
Query: 314 RRLQEK 331
RR QEK
Sbjct: 1123 RRAQEK 1128
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 134 DSRPLQSSRLPGIEELTLGLKQKLHLQARARAAPYYIRKQEPVDLVERLLEQRALVAEAV 313
D P L +E L+ K+ + AA +E + ++ E RAL A+ +
Sbjct: 1063 DRNPNDVKSLQNLERDLKPLEDKIAALEKLAAAVKKDHPEEAAAIERKIAELRALHADLL 1122
Query: 314 RRLQEK 331
RR QEK
Sbjct: 1123 RRAQEK 1128
>U55365-7|AAN84869.1| 133|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 94, isoform b protein.
Length = 133
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 236 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCPEISVDS 364
YY+ +P D + ++ E L+ + R LQE+ Q C +V +
Sbjct: 78 YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 120
>U55365-6|AAN84868.1| 338|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 94, isoform a protein.
Length = 338
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 236 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCPEISVDS 364
YY+ +P D + ++ E L+ + R LQE+ Q C +V +
Sbjct: 283 YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 325
>U39995-4|AAF99993.2| 675|Caenorhabditis elegans Potassium channel,
kvqlt familyprotein 2 protein.
Length = 675
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 128 EQDSRPLQSSRLPGIEELTLGLKQKLHLQAR---ARAAPYYIRKQEPVDLVERLLEQRAL 298
E++++ Q++RL + T+ + HL R Y++ + + E + Q +
Sbjct: 334 EEENKNQQTNRLRNLAASTIQCWWRYHLATNWKPPRRYTYFVHVCYKLYVTEERINQNRV 393
Query: 299 VAEAVRRLQEKKQPCPEISV 358
+A+ +R EKK+P + S+
Sbjct: 394 LAKKLREKLEKKRPIKKKSL 413
>AY204182-1|AAO39186.1| 338|Caenorhabditis elegans nuclear receptor
NHR-94 protein.
Length = 338
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 236 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCPEISVDS 364
YY+ +P D + ++ E L+ + R LQE+ Q C +V +
Sbjct: 283 YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 325
>AF273838-1|AAG15185.1| 273|Caenorhabditis elegans nuclear receptor
NHR-94 protein.
Length = 273
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 236 YYIRKQEPVDLVERLLEQRALVAEAVRRLQEKKQPCPEISVDS 364
YY+ +P D + ++ E L+ + R LQE+ Q C +V +
Sbjct: 218 YYLENNKPTDRMLKVFEALLLMEKTDRWLQEEVQMCEMYNVQA 260
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 134 DSRPLQSSRLPGIEELTLGLKQKLHLQARARAAPYYIRKQEPVDLVERLLEQRALVAEAV 313
D P L +E L+ K+ + AA +E + ++ E RAL A+ +
Sbjct: 1063 DRNPNDVKSLQNLERDLKPLEDKIAALEKLAAAVKKDHPEEAAAIERKIAELRALHADLL 1122
Query: 314 RRLQEK 331
RR QEK
Sbjct: 1123 RRAQEK 1128
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 189 PRVSSSIPGNLLDCSGRLSCSVV*RFSYLDFSFNIMMDNGLDLLCN 52
P V SIP +L+D +LS S +LD S I+ LD C+
Sbjct: 1852 PTVEVSIP-DLMDAEAKLSWSEDQNDRFLDLSTQILRTGALDPKCS 1896
>Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical
protein B0024.3 protein.
Length = 254
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = -2
Query: 168 PGNLLDCSGRLSCSVV*RFSYLDFSFNIMMDNGLDLLCNGL 46
PG++LDC G C + + + F I+ + ++C+ +
Sbjct: 174 PGSMLDCCGMYCCHNIGEYIFKGILFTIIAVFVVCVMCSSM 214
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
protein K02C4.3 protein.
Length = 1307
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = +2
Query: 164 PGIEELTLGLKQKLHLQARARAAPYYIRKQEPVDLVERLLEQRALVAE 307
PG L L H+ ++ P Y+ ++EP L R+ E
Sbjct: 355 PGYNAANLSLPSSSHVDPKSTLNPMYVNEKEPSSTPTSLFGTRSKTIE 402
>U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 45 protein.
Length = 525
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 SRLPGIEELTLGLKQKLHLQARARAAPYYIRKQEPVD-LVERLLEQRALVAEAVRRLQEK 331
S LPGI + T + +K+ L+ YY + + + + + + +A AV + E+
Sbjct: 438 SNLPGITDATRDISEKVELRLAEDLHTYYAEQYDNNNPNYAGRITRLSSIASAVDEITER 497
Query: 332 KQPCPEIS 355
K+ ++S
Sbjct: 498 KREDSQVS 505
>AC024818-4|AAF60782.5| 457|Caenorhabditis elegans Hypothetical
protein Y54H5A.4 protein.
Length = 457
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 107 YENRHTTEQDSRPLQSSRLPG 169
YE TT SRPL SS PG
Sbjct: 158 YEELSTTPSTSRPLLSSACPG 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,161,346
Number of Sequences: 27780
Number of extensions: 150632
Number of successful extensions: 300
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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