Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L19
(337 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 30 0.47
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 30 0.47
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 27 2.5
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 27 2.5
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 27 2.5
Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical p... 27 3.3
AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical... 27 3.3
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 27 3.3
Z78542-1|CAB01743.1| 166|Caenorhabditis elegans Hypothetical pr... 27 4.4
U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of c... 26 5.8
AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrat... 26 5.8
Z72507-5|CAA96627.1| 204|Caenorhabditis elegans Hypothetical pr... 26 7.7
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 156 VAVLMYRKLLSVVSFWDSPVSGSDCALPLATPLC 257
+A +Y ++S+ WDS V + C P TP C
Sbjct: 201 IAQAVYFAIVSLSKIWDSEVPWASCGNPWNTPRC 234
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 156 VAVLMYRKLLSVVSFWDSPVSGSDCALPLATPLC 257
+A +Y ++S+ WDS V + C P TP C
Sbjct: 201 IAQAVYFAIVSLSKIWDSEVPWASCGNPWNTPRC 234
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 228 SPNLKLVNPKKTQQKAISYTSEPPPANILNKLAKLHKCHLDF 103
+PN K NP QK + T EPPP + L+K H+C + F
Sbjct: 556 TPNPKNENPLLAMQKMWAET-EPPPPRQMPVLSK-HQCGVCF 595
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 228 SPNLKLVNPKKTQQKAISYTSEPPPANILNKLAKLHKCHLDF 103
+PN K NP QK + T EPPP + L+K H+C + F
Sbjct: 527 TPNPKNENPLLAMQKMWAET-EPPPPRQMPVLSK-HQCGVCF 566
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 228 SPNLKLVNPKKTQQKAISYTSEPPPANILNKLAKLHKCHLDF 103
+PN K NP QK + T EPPP + L+K H+C + F
Sbjct: 556 TPNPKNENPLLAMQKMWAET-EPPPPRQMPVLSK-HQCGVCF 595
>Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical
protein W02B12.7 protein.
Length = 471
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 148 HSQ*TC*IA*MPLGFQLSYDIRGDTTVSSPGVVP 47
H + C IA P G ++ +RG+ + S GV+P
Sbjct: 211 HGKNVCLIAYGPTGSGKTFTMRGEDSADSEGVIP 244
>AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical
protein Y105E8B.4 protein.
Length = 402
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 2 HEGLSNYWQWRSCREWYHTR*GNCGVTSNIITQLKSKWHLCNLASLLRMFAGG 160
H LS+ SCR T N +T+ L +W +CN SLL++ G
Sbjct: 11 HSYLSSKPSCSSCRRQSSTSQKNECMTNPGSIVLTQRWTVCNFESLLKLSRPG 63
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 148 HSQ*TC*IA*MPLGFQLSYDIRGDTTVSSPGVVP 47
H + C IA P G ++ +RG+ + S GV+P
Sbjct: 345 HGKNVCLIAYGPTGSGKTFTMRGEDSADSEGVIP 378
>Z78542-1|CAB01743.1| 166|Caenorhabditis elegans Hypothetical
protein F20D1.1 protein.
Length = 166
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 122 CNLASLLRMFAGGGSDV*EIAFCCVFLGF 208
C +A LL+M AG E FCC F+ F
Sbjct: 56 CMVAILLQMTAGALVIALEAPFCCQFVDF 84
>U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of clr
protein 1 protein.
Length = 430
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 243 LGEGRSPNLKLVNPKKTQQKAISYTSEPP 157
L RS + + ++T+ ++SYTS PP
Sbjct: 209 LESSRSETSSMYSSRRTEDDSVSYTSGPP 237
>AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrate
adaptor proteinSOC-1 protein.
Length = 430
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 243 LGEGRSPNLKLVNPKKTQQKAISYTSEPP 157
L RS + + ++T+ ++SYTS PP
Sbjct: 209 LESSRSETSSMYSSRRTEDDSVSYTSGPP 237
>Z72507-5|CAA96627.1| 204|Caenorhabditis elegans Hypothetical
protein F17C11.5 protein.
Length = 204
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 204 DSPVSGSDCALPLATPLC 257
D+P+ DC+LP A LC
Sbjct: 183 DAPIDDKDCSLPQAGVLC 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,038,396
Number of Sequences: 27780
Number of extensions: 162982
Number of successful extensions: 408
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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