Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L17
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 80 6e-17
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 1.8
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 2.4
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 3.2
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 24 5.6
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 24 5.6
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 24 5.6
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 24 5.6
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 23 7.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 23 7.5
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 23 7.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 23 7.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 23 9.9
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 23 9.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 23 9.9
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 80.2 bits (189), Expect = 6e-17
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +3
Query: 33 MAKSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 200
MAKSKNHTNHNQN+KAHRNGIK+P+K R++S D KF RNQ+F +G ++ +Q
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 64 TKTEKLIEMELKNRRRSDTNPHLAWILNS*GT 159
TK +KL E+K + R LAW+ + GT
Sbjct: 1014 TKKKKLTRNEIKAKERRARERELAWLQSPKGT 1045
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 220 LSAALNNCLAGLRLPFLQNLWFL 152
LS +N+ + ++PFLQ LW+L
Sbjct: 618 LSHGINHGILLRKVPFLQYLWYL 640
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 3.2
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 24 LSEMAKS-KNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGNLK 188
L ++A S K H+ + ++K+++NG KK K V ++ + LR R N+K
Sbjct: 170 LLDLALSEKTHSLNKASKKSNKNGDKKRKHVSKSNSKHAKHE-LRTNRMLDGENVK 224
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -3
Query: 182 VTFFTEPLVPQEFRIHAKCGFVSD 111
V+FF+ P + Q+ +++A GF+++
Sbjct: 570 VSFFSRPEMTQDSQLNASSGFLTN 593
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 23.8 bits (49), Expect = 5.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 185 KVTFFTEPLVPQEFRIHAKCGFVSDLLRFFNSISMSFSVLVM 60
K T F PL+ E+ H + LLR FNS +V+
Sbjct: 632 KATGFIIPLMEPEYASHFTRRIMKILLREFNSPDEEMKKIVL 673
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 33 MAKSKNHTNHNQNRKAHRNGIKKPKK 110
+AK + NHN ++ A + I +P+K
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 5.6
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 97 KNRRRSDTNPHLAW--ILNS*GTRGSVKKVTLNPPSS 201
K R SD+ H +LNS G+ S+KK PPSS
Sbjct: 118 KPTRESDSLKHQKSHPMLNSLGSSLSLKKSVSRPPSS 154
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 194 GGFKVTFFTEPLVPQEFRIHAKCG 123
GGF + F + PQE+ H G
Sbjct: 992 GGFIASRFLTGIAPQEYYFHCMAG 1015
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 12 IYGNL-SEMAKSKNHTNHNQNRKAHRNGIKKPKKVRH 119
+YG + +EM ++ N+N +R + KP ++
Sbjct: 447 LYGKVQTEMVSNRGEAVLNENNSKNRTNVTKPNSYKN 483
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = -3
Query: 125 GFVSDLLRFFNSISMSFSVLVMICMILRLGHFA*VSVYNPR 3
GF+ DL F+ + V +++ + H + V+ PR
Sbjct: 219 GFLPDLFSFWRDLGTHHLVSIILFTRVEYSHHGPMCVWQPR 259
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 58 IITKTEKLIEMELKNRRRSDTNPH 129
II TEK + + L+NR DT H
Sbjct: 715 IIPTTEKSLYLPLRNRSTIDTISH 738
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 185 KVTFFTEPLVPQEFRIHAKC 126
K++ F P +PQ R AKC
Sbjct: 2316 KISTFLRPFLPQLQRTFAKC 2335
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 85 EMELKNRRRSDTNPHLAWILNS*GTRGSVKKVT 183
E LKN +R+ PH L G + ++KK++
Sbjct: 409 EESLKNLQRARDGPHNKLWLGVFGNKDTIKKLS 441
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 196 LAGLRLPFLQNLWFLRNLG 140
L R+PF + +WF+R G
Sbjct: 168 LVKFRVPFTRAIWFIRCAG 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,030,154
Number of Sequences: 5004
Number of extensions: 17449
Number of successful extensions: 57
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -