Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L17
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical pr... 76 4e-15
AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical... 58 2e-09
AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical ... 46 7e-06
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 28 1.5
U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 25 7.9
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 25 7.9
L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome regu... 25 7.9
>Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical
protein B0513.3 protein.
Length = 62
Score = 76.2 bits (179), Expect = 4e-15
Identities = 34/50 (68%), Positives = 39/50 (78%)
Frame = +3
Query: 33 MAKSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGN 182
MAKSKNHTNHNQN+KAHRNGI KPKK S G+D KF++N RF +K N
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50
>AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical
protein Y47H9C.14 protein.
Length = 87
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +3
Query: 39 KSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGN 182
K +NHTNHN+N KAHRNGI KPKK S G +F+++ RF +K N
Sbjct: 14 KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61
>AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical
protein Y37H9A.5 protein.
Length = 167
Score = 45.6 bits (103), Expect = 7e-06
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = +3
Query: 39 KSKNHTNHNQNRKAHRNGIKKPK 107
KSKNHTNHNQN AHR GI KPK
Sbjct: 80 KSKNHTNHNQNNTAHRIGITKPK 102
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 15 YGNLSEMAKSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCK 173
YG + + ++ T + Q K HR+ +KK ++ RH + P + R C+
Sbjct: 249 YGKTPDKEQWESMTENEQ--KLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299
>U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical
protein C04E7.3 protein.
Length = 518
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 27 SEMA-KSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGNLK 188
SEMA K N +++ N + KK+ +D FLRN R+ K GNLK
Sbjct: 314 SEMALKRDNDRYQRRSQLKTANNRELAKKMMSMERNEVD--FLRNARYSKHGNLK 366
>Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical
protein T09B9.2 protein.
Length = 516
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 131 KCGFVSDLLRFFNSISMSFSVLVMICMI 48
+C FVS+ + F S + FS L+ +C +
Sbjct: 6 ECVFVSEKSKIFPSTRLFFSFLLCLCFV 33
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 61 ITKTEKLIE--MELKNRRRSDTNPHLAWILN 147
+TK EK+ E ++ +NR R T PH+ L+
Sbjct: 61 LTKLEKIREEIIDYQNRERPPTEPHMKTFLD 91
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 61 ITKTEKLIE--MELKNRRRSDTNPHLAWILN 147
+TK EK+ E ++ +NR R T PH+ L+
Sbjct: 61 LTKLEKIREEIIDYQNRERPPTEPHMKTFLD 91
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 3 TRVIYGNLSEMAKSKNHTNHNQNRKAHRNGI 95
T + GNLS + H H NR NGI
Sbjct: 990 TPCVSGNLSHEHNMRAHAFHGANRMIEPNGI 1020
>L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 3 protein.
Length = 504
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 185 KVTFFTEPLVPQEFRIHAKCGFVSDLLRFFNSISMSFSVLVMICMILR 42
K +F + +E R+ GF++ LR + S S V+IC +LR
Sbjct: 177 KTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNFSESQAVLICWLLR 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,540,640
Number of Sequences: 27780
Number of extensions: 93956
Number of successful extensions: 329
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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