Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L16
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    29   0.13 
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   2.8  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   4.9  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    23   6.5  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    23   8.5  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    23   8.5  

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 93  LLEANLNTVIPR---LARPRYARFHYNANVKFRAQMPRITRKSTYRH 224
           L E+ LN V  R   +   R  +   N  ++F+ Q+P ++R++ YRH
Sbjct: 115 LKESELNFVAARDLLIKTKRLPKPFNNLLIQFQIQVPNVSRRTVYRH 161


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 MSNFALKCLALRERVRIDIM*RE*MYCAVENK 264
           +S+ AL C    + +R D + R   YC+ E K
Sbjct: 137 LSSIALTCKHFAKALRADSLYRSFCYCSCEQK 168


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 103

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 6  RCKQTIPKLL*F 41
          RCKQ IPKLL F
Sbjct: 5  RCKQMIPKLLPF 16


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 210 STYRHNVKRIDVLCR 254
           S Y+HN+K  + LCR
Sbjct: 36  SKYKHNLKATEELCR 50


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 162 NANVKFRAQMPRITRKSTYRHNVKRI 239
           +A   F+A +PR  R+    HN+KRI
Sbjct: 65  SAQRAFQA-LPRCLRRRAASHNIKRI 89


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 17  NHSKVIIIQK*NFPVLLYLTIEKLRIIRG*PQYSNTPLSATPLRA 151
           N SKVI+I +   P LLY ++          ++S+ P S  P +A
Sbjct: 164 NSSKVILISQKMKPTLLYKSLSN--------EFSSLPFSFMPAKA 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,138,902
Number of Sequences: 5004
Number of extensions: 18669
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)