Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L16
         (284 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0556 - 22097423-22097445,22097579-22097613,22097873-220979...    26   5.4  
01_06_0921 - 33017892-33018953                                         26   5.4  

>06_03_0556 -
           22097423-22097445,22097579-22097613,22097873-22097941,
           22113969-22114807
          Length = 321

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 149 AVSL*RECQISRSNASHYAKEYV*T*CKENRCIVPWKIRVY 271
           AVSL RE  +++SN S Y        C + +   PW++  Y
Sbjct: 193 AVSLHREFWVAKSNRSQYEVR-----CVKEKDGCPWRVHAY 228


>01_06_0921 - 33017892-33018953
          Length = 353

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 149 AVSL*RECQISRSNASHYAKEYV*T*CKENRCIVPWKIRVY 271
           AVSL RE  +++SN S Y        C + +   PW++  Y
Sbjct: 193 AVSLHREFWVAKSNRSQYEVR-----CVKEKDGCPWRVHAY 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,363,529
Number of Sequences: 37544
Number of extensions: 93695
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)