Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L16
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical pr...    28   0.94 
AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical ...    27   2.2  
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    27   2.9  
Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z80223-2|CAB02320.1|  344|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z71185-10|CAA94908.1|  273|Caenorhabditis elegans Hypothetical p...    25   6.6  
AF025468-2|AAF02174.2|  342|Caenorhabditis elegans Serpentine re...    25   6.6  
Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and c...    25   8.7  

>Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical
           protein F40F9.4 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 273 IYTLIFHGTIHLFSLHYVYTY 211
           IYT IF  ++ LF+ H+VY Y
Sbjct: 88  IYTAIFGASMALFASHFVYRY 108


>AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical
           protein F08E10.6 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 266 LLFSTAQYIYSLYIMSIRTLSRNAR 192
           ++F  A  +Y LYI   RTLS+N R
Sbjct: 223 IIFHVACLVYYLYIAPPRTLSQNTR 247


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 279 YAIYTLIFHGTIHLFSLHYVYTYS 208
           Y IYT+  H   H++ ++++YTY+
Sbjct: 32  YTIYTI--HQIYHIYYIYHIYTYT 53


>Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical
           protein T23D5.7 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 282 LYAIYTLIFHGTIHLFSLHYVYTY 211
           L A+YT ++  TI L ++ +VY Y
Sbjct: 92  LLAVYTALYSITISLLAVQFVYRY 115


>Z80223-2|CAB02320.1|  344|Caenorhabditis elegans Hypothetical
           protein F26D10.8 protein.
          Length = 344

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 273 IYTLIFHGTIHLFSLHYVYTY 211
           +YT IF  ++ LF+ H++Y +
Sbjct: 90  VYTAIFGASMALFASHFIYRF 110


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 90  ELLEANLNTVIPRLARPRYARFHYNANV-KFRAQMPRITRKSTYRHNVKRID 242
           E+LE   +  + R  R RYA FH N  +   R  M  +  +S Y   +K +D
Sbjct: 650 EVLETRNSETLTREPRLRYAFFHMNTTIFAIRKNMLTLIEQS-YEAFMKTLD 700


>Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical
           protein C31A11.9 protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 273 IYTLIFHGTIHLFSLHYVYTY 211
           IY   F  T+ +FS+H+ Y Y
Sbjct: 95  IYADFFASTMAIFSIHFAYRY 115


>Z71185-10|CAA94908.1|  273|Caenorhabditis elegans Hypothetical
           protein C35A5.6a protein.
          Length = 273

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 262 YFPRHNT-SILFTLCLYVLFR 203
           Y P HN+  ILF +CL V FR
Sbjct: 9   YHPPHNSWFILFVVCLLVSFR 29


>AF025468-2|AAF02174.2|  342|Caenorhabditis elegans Serpentine
           receptor, class h protein308 protein.
          Length = 342

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 242 IYSLYIMSIRTLSRNARHLSAKFDIRVIVKPRV 144
           +Y LY++  RTLS+  R     F + V+++  V
Sbjct: 234 VYYLYVVPPRTLSKETRQNQRVFLVAVVLQTSV 266


>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
           protein C55A1.5 protein.
          Length = 361

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 282 LYAIYTLIFHGTIHLFSLHYVYTY 211
           L A YT I+  TI + ++ +VY Y
Sbjct: 105 LMAFYTSIYASTICMLAVQFVYRY 128


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 144 YARFHYNANVKFRAQMPRITRKSTYRHN 227
           Y R H NA   FRA M ++ ++    HN
Sbjct: 377 YFRQHENAENHFRAAMKKLHKEDITAHN 404


>Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 282 LYAIYTLIFHGTIHLFSLHYVYT-YSF 205
           L A Y   F+  I  + LHY+YT +SF
Sbjct: 128 LTAFYVDFFYNVILAWGLHYLYTSFSF 154


>Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 282 LYAIYTLIFHGTIHLFSLHYVYT-YSF 205
           L A Y   F+  I  + LHY+YT +SF
Sbjct: 128 LTAFYVDFFYNVILAWGLHYLYTSFSF 154


>AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and
           chloride-dependentantidepressant- and cocaine-sensitive
           dopamine transporterprotein.
          Length = 615

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 282 LYAIYTLIFHGTIHLFSLHYVYT-YSF 205
           L A Y   F+  I  + LHY+YT +SF
Sbjct: 128 LTAFYVDFFYNVILAWGLHYLYTSFSF 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,118,101
Number of Sequences: 27780
Number of extensions: 99757
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)