Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L14
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.56 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.56 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 368 FDACLASESLIKQ-IPRLLGPGLNKAGKFPGLLSHQE 475
           F+A L    L+++ +  +    LNK GK P L++H+E
Sbjct: 551 FNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHRE 587



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  ERITRYFRHFYE 44
           +RIT YF H Y+
Sbjct: 410 QRITEYFEHRYQ 421


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 368 FDACLASESLIKQ-IPRLLGPGLNKAGKFPGLLSHQE 475
           F+A L    L+++ +  +    LNK GK P L++H+E
Sbjct: 519 FNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHRE 555



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  ERITRYFRHFYE 44
           +RIT YF H Y+
Sbjct: 378 QRITEYFEHRYQ 389


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/43 (20%), Positives = 19/43 (44%)
 Frame = +2

Query: 113 KEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 241
           +E   +F    + Q+G +  + +KD  + G      I  P ++
Sbjct: 464 EEAACRFSAVAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVE 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,886
Number of Sequences: 438
Number of extensions: 1861
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)