Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L13
(207 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 85 2e-18
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 85 2e-18
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 0.78
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 24 3.2
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 23 5.5
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 23 7.3
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 22 9.6
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 22 9.6
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 22 9.6
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 22 9.6
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 22 9.6
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 84.6 bits (200), Expect = 2e-18
Identities = 37/65 (56%), Positives = 45/65 (69%)
Frame = +2
Query: 8 ETARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFC*SSG 187
+T KELAPYDPDW+YVR AAI RHIY+R VGV + K++GG G+ PSH SG
Sbjct: 38 KTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSG 97
Query: 188 SIARK 202
S+ RK
Sbjct: 98 SVQRK 102
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 84.6 bits (200), Expect = 2e-18
Identities = 37/65 (56%), Positives = 45/65 (69%)
Frame = +2
Query: 8 ETARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFC*SSG 187
+T KELAPYDPDW+YVR AAI RHIY+R VGV + K++GG G+ PSH SG
Sbjct: 38 KTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSG 97
Query: 188 SIARK 202
S+ RK
Sbjct: 98 SVQRK 102
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 0.78
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 119 QS*LQQESGYRCDAV*QHSVHKTNQGHR 36
QS +++SGY D V S H+T + HR
Sbjct: 90 QSFQREDSGYNDDVVTNSSSHRTPRHHR 117
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 5 EETARFKELAPYDPDWFY 58
EE+++FKE+ DW Y
Sbjct: 605 EESSKFKEMLTKAEDWLY 622
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 33 LPMTLIGFMYAVLLYC 80
+P +I F+Y L+YC
Sbjct: 150 IPSLVISFLYITLVYC 165
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 22.6 bits (46), Expect = 7.3
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -3
Query: 202 FTSNTAR*SAEVRGCDTIAFATTKNFSDSLNSNRRADIDVTQYSSTAYIKPIRVIGSQ 29
FT+NTA+ + E+ C + ++T S S+NS + ++ Q SS+ ++ SQ
Sbjct: 248 FTTNTAKYANELVSCSMLDSSST--LSKSVNS--KINLKSHQSSSSVQNSSRKLTSSQ 301
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 118 SLNSNRRADIDVTQYSSTAYIKPIRVIGSQFLETSCLL 5
S + +R ++ + STAY + + S+ + SCLL
Sbjct: 15 SFSPLKRISVEKSLLDSTAYNNSLDWLRSKNFKVSCLL 52
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 32 APYDPDWFYVRCAAILRHIYIRSPVGVKTVTKI 130
A Y PD+ + +IY+ SP +K+ TKI
Sbjct: 347 AAYRPDFEQCFTGDMNGNIYMWSPKALKSPTKI 379
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 20 FKELAPYDPDWFYVR 64
FK+L Y PD F VR
Sbjct: 444 FKKLEQYSPDVFVVR 458
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 74 ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFC*SSGSIARKA 205
++R+ S +G +++ GG GVTPSH S A +A
Sbjct: 389 LMRNREQSSLLGQESIPLQPGGTGYTGVTPSHAANGSALAAPQA 432
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 88 DVTQYSSTAYIKPIRVIGSQFLETSCLLV 2
D+T + A + P+R +G L TS ++
Sbjct: 594 DITALAKDAAMGPLRNLGDALLTTSAEMI 622
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,440
Number of Sequences: 5004
Number of extensions: 11432
Number of successful extensions: 33
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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