Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L13
         (207 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...    93   2e-20
05_07_0293 + 29031318-29031812,29032096-29032158,29032365-290324...    25   6.3  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    25   8.4  
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672...    25   8.4  
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    25   8.4  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 40/64 (62%), Positives = 49/64 (76%)
 Frame = +2

Query: 8   ETARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFC*SSG 187
           +TARFKEL PYDPDW+Y R A+I R IY+R  +GV    KI+GGR+RNG  P HFC SSG
Sbjct: 41  KTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSG 100

Query: 188 SIAR 199
           +I+R
Sbjct: 101 AISR 104


>05_07_0293 +
           29031318-29031812,29032096-29032158,29032365-29032490,
           29032783-29032911,29033161-29033311,29033853-29033962,
           29034502-29034607,29034697-29034894,29034988-29035030,
           29035129-29035207
          Length = 499

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   HEETARFKELAPYDPDWFYVRCAAILR 82
           H+E  R  ++ P DPD++ +  A ++R
Sbjct: 111 HDEQCRRVQMEPADPDFYRIGYARMMR 137


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 56   YVRCAAILRHIYIRSPVGVKTVTKIFGG 139
            ++ C+ IL+HI I  P  +KT  + F G
Sbjct: 1231 FLSCSEILQHIQIWRPGVLKTYHESFAG 1258


>02_05_0969 +
           33165396-33165935,33166352-33166883,33166988-33167242,
           33167515-33167606,33167745-33167942,33168049-33168240,
           33168341-33168562,33168858-33169024,33169117-33169210,
           33169308-33169364,33169459-33169587,33169681-33169752,
           33170180-33170293,33170419-33170580,33170666-33170794,
           33171057-33171158,33171266-33171342,33171470-33171592,
           33171666-33172227
          Length = 1272

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 109 SNRRADIDVTQYSSTAYIKPIRVIGSQFLETSC 11
           S RRA    T+  +   +K IR   S+FLE  C
Sbjct: 630 SERRAKERYTKEFAEENLKAIRAFSSKFLEVLC 662


>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 47  DWFYVRCAAILRH 85
           DW + RCAA++ H
Sbjct: 498 DWLFPRCAAVVHH 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,174,700
Number of Sequences: 37544
Number of extensions: 76618
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)