Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L13
         (207 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    80   2e-16
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    80   2e-16
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    26   3.2  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    26   3.2  
U41993-6|AAA83448.2|  313|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    25   7.4  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 34/61 (55%), Positives = 43/61 (70%)
 Frame = +2

Query: 23  KELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFC*SSGSIARK 202
           KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RK
Sbjct: 44  KELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRK 102

Query: 203 A 205
           A
Sbjct: 103 A 103


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 34/61 (55%), Positives = 43/61 (70%)
 Frame = +2

Query: 23  KELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFC*SSGSIARK 202
           KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RK
Sbjct: 44  KELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRK 102

Query: 203 A 205
           A
Sbjct: 103 A 103


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 39  MTLIGFMYAVLLYC 80
           M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 39  MTLIGFMYAVLLYC 80
           M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225


>U41993-6|AAA83448.2|  313|Caenorhabditis elegans Hypothetical
           protein F44A2.7 protein.
          Length = 313

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 2   HEETARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTV 121
           +E+   FKEL+PY        C+A+++   ++ P G+K V
Sbjct: 128 YEKRYGFKELSPY------FHCSAVIQIENLKIPSGIKEV 161


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
            protein F52C12.4 protein.
          Length = 1635

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 163  GCDTIAFATTKNFSDSLNSNRRADIDVTQYSSTAYIKPIRV-IGSQF 26
            G D+  +AT K  +DS+N N       T  +S+  +K   V +G+ F
Sbjct: 1575 GSDSTGYATWKTVTDSVNKNLLFKAVQTLVNSSRLVKNGSVHVGAHF 1621


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 95  RSPVGVKTVTKIFGGRKRNGVTPSHF 172
           R   G +  T + GGR   GV  SHF
Sbjct: 87  RRCAGPRVTTAVVGGRGTRGVRVSHF 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,384,428
Number of Sequences: 27780
Number of extensions: 67046
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)