Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L11
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   199   1e-52
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   199   1e-52
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   194   7e-51
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    30   0.18 
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.42 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   0.97 
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   1.3  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   2.2  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    25   3.9  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.8  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    24   9.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   9.0  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  199 bits (486), Expect = 1e-52
 Identities = 90/143 (62%), Positives = 107/143 (74%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 190
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 191 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 371 XXFCLKPGRKYCRVGRLSHEVGW 439
               LKPGRKYC VGRLS EVGW
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGW 148


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  199 bits (486), Expect = 1e-52
 Identities = 90/143 (62%), Positives = 107/143 (74%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 190
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 191 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 371 XXFCLKPGRKYCRVGRLSHEVGW 439
               LKPGRKYC VGRLS EVGW
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGW 148


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  194 bits (472), Expect = 7e-51
 Identities = 85/143 (59%), Positives = 105/143 (73%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 190
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 191 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
           NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 371 XXFCLKPGRKYCRVGRLSHEVGW 439
               LKP RKYC +GRLS EVGW
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGW 148


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +2

Query: 86  GNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVN--PARGPFHFRAPSKILWKTVRGM 259
           G+ VVV  C +I ISG    N  K+ S   +  ++           R    +L + V GM
Sbjct: 52  GDVVVVTDCSEIGISGRKLENH-KYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGM 110

Query: 260 IPHKTERGKNALRRLRTYDGCPPPF 334
           +P + +     ++RL  YDG   P+
Sbjct: 111 LP-RNKLWDRRMKRLYIYDGAEHPY 134


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 38  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 142
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -1

Query: 426 CERRPTRQYLRPGFRQNTRSAA--GTTTRRLLSNGGGQP 316
           C R P R Y  PGF +  + AA  G  T    S   G+P
Sbjct: 226 CPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSGVFGEP 264


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 180 LLRRNDINFNLFLKKLPEMLICSQRT 103
           +L  NDIN N  L KLP  ++ ++RT
Sbjct: 37  VLANNDINENTVLLKLPPNILINKRT 62


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 151 FVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQV 38
           F   +I GNV LF+T+ H     QQ L+    +  E V
Sbjct: 392 FELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAV 429


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 136 IAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAP 29
           +A NV+ F++  +  V+ ++    Y G++ +QVP P
Sbjct: 1   MASNVDKFSSRFYLNVNKEELKKEYVGKTIQQVPTP 36


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 439 PSDFVRETSHTTVFTARLQTEYT 371
           PSDF+R  S  +V T+ L+T  T
Sbjct: 631 PSDFIRLNSEESVGTSSLRTSQT 653


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = -1

Query: 132 PEMLICSQRTTTTLFPSSRTLAI------TAASRPSKCPRPSITMALP 7
           P  L+ S  T  +  P S  L +      TA+S PS C  PS+  + P
Sbjct: 280 PNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSCPSVKSSGP 327


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 146  NKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 262
            N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 83  EGNKVVVVRCEQINISGNFFRNKLKFMSFL 172
           E   +V++ CE +    +FF  KLK+   +
Sbjct: 80  ERKVLVLIHCESLQSFDSFFAQKLKYADLI 109


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 174 RRNDINFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITAASRP 46
           RR +INF       P M   +  +TTT+FP    L     S P
Sbjct: 73  RRYEINFGQIYLSRPTMTE-ADGSTTTMFPQEARLRNLTYSSP 114


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 107 RCEQINISGNFFRNKL-KFMSF 169
           RC +INI+G+ F N +  F SF
Sbjct: 220 RCSKINITGSVFDNFIPSFFSF 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,605
Number of Sequences: 5004
Number of extensions: 42402
Number of successful extensions: 131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)