Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L11
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 184 3e-47
07_01_0071 - 522920-523063,524125-524212,524289-524677 180 5e-46
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 106 7e-24
11_04_0056 + 12942802-12942920,12943022-12943115 59 2e-09
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 38 0.005
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 29 2.2
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 2.9
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 28 3.8
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 27 5.1
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924... 27 5.1
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 27 8.8
06_01_0779 - 5823389-5823787 27 8.8
01_06_1010 + 33802947-33803473,33804096-33804273 27 8.8
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 184 bits (448), Expect = 3e-47
Identities = 80/141 (56%), Positives = 103/141 (73%)
Frame = +2
Query: 17 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNP 196
+V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K++ FLRKR N P
Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 197 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 376
+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 72 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131
Query: 377 FCLKPGRKYCRVGRLSHEVGW 439
L+PG KYC +G+LS EVGW
Sbjct: 132 LRLQPGHKYCLLGQLSKEVGW 152
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 180 bits (438), Expect = 5e-46
Identities = 78/143 (54%), Positives = 101/143 (70%)
Frame = +2
Query: 11 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 190
+ +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K++ FLRKR N
Sbjct: 10 RRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNT 69
Query: 191 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 70 KPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDAL 129
Query: 371 XXFCLKPGRKYCRVGRLSHEVGW 439
L+PG KYC +G+LS EVGW
Sbjct: 130 KVLRLQPGHKYCLLGQLSKEVGW 152
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 106 bits (255), Expect = 7e-24
Identities = 45/85 (52%), Positives = 57/85 (67%)
Frame = +2
Query: 185 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 364
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 365 XXXXFCLKPGRKYCRVGRLSHEVGW 439
L+PG KYC +G+LS EVGW
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGW 86
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.8 bits (136), Expect = 2e-09
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +2
Query: 278 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRKYCRVGRLSHEVGW 439
RG+ AL RL+ Y+G PPP+D L+PG KYC +G+LS EVGW
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGW 62
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 37.5 bits (83), Expect = 0.005
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +2
Query: 20 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKFM 163
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 164 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 337
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 102 SFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE*SHIRLSV 281
+ V+NR T + G N L S++ ++ S + VDL + LH + + ++ L V
Sbjct: 35 ALVINRTTLSELYLGGNQLLTTSWISNLTSLRVVDLSQNFLHGYNGICNLHQLEYLHLGV 94
Query: 282 GRMH 293
+H
Sbjct: 95 NMLH 98
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 185 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 331
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 115 FTTNDHNFVSFQ-QDLSNYCGQSTEQVPAPVDYYGLTSC 2
F N +++ S +D+ NY QST AP + L +C
Sbjct: 422 FDNNGNSYASLLLEDIQNYHQQSTGSAAAPAPAFSLPAC 460
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 93 LFPSSRTLAITAASRPSKCPRPSITMALPRA 1
LFP+ + + A RP PRP+I+ A PRA
Sbjct: 843 LFPAQQR---SQAMRPQAVPRPTISQAPPRA 870
>02_02_0350 +
9239138-9240218,9240755-9240906,9241392-9241457,
9242715-9242951
Length = 511
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 159 NFNLFLKKLPEM-LICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITM 16
NF++ L + +IC+Q T FP+ +L I S+ S P P TM
Sbjct: 212 NFSVLLLPFSKCSVICTQDINTVWFPNLCSLEIRNCSKLSLPPMPHNTM 260
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 324 GQPSYVRSLLNAFFPRSVLCGII 256
G + VRS+L+ FPRSVL G +
Sbjct: 673 GWDNKVRSILSTSFPRSVLLGAL 695
>06_01_0779 - 5823389-5823787
Length = 132
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 72 RSCWKETKLWSFVVNRLTFPAISSGTN*SLCHSFVKDVM--STQPVDL 209
R CW T W R+ A +S T +LCHS ++ S P D+
Sbjct: 78 RCCW--TSWWIVTAPRMMLSAPTSYTWLNLCHSMASTILVRSNPPRDV 123
>01_06_1010 + 33802947-33803473,33804096-33804273
Length = 234
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 429 SCERRPTRQYLRPGFRQNTRSAAGTTTRRLLSNGGGQ 319
S RR LR + TRSA +T +R NGGG+
Sbjct: 3 SANRRAHMSSLRLLPEKPTRSALSSTPQRRAGNGGGE 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,261
Number of Sequences: 37544
Number of extensions: 304388
Number of successful extensions: 830
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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