Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L11
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   199   6e-52
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   199   6e-52
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    27   4.6  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    27   4.6  
AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    27   6.0  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  199 bits (486), Expect = 6e-52
 Identities = 89/143 (62%), Positives = 110/143 (76%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 190
           +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRKRCN+
Sbjct: 6   RAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNI 65

Query: 191 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
           NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +            
Sbjct: 66  NPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSA 124

Query: 371 XXFCLKPGRKYCRVGRLSHEVGW 439
             F L+P RK+C VGRLSHEVGW
Sbjct: 125 SRFRLQPRRKFCVVGRLSHEVGW 147


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  199 bits (486), Expect = 6e-52
 Identities = 89/143 (62%), Positives = 110/143 (76%)
 Frame = +2

Query: 11  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 190
           +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRKRCN+
Sbjct: 6   RAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNI 65

Query: 191 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 370
           NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +            
Sbjct: 66  NPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSA 124

Query: 371 XXFCLKPGRKYCRVGRLSHEVGW 439
             F L+P RK+C VGRLSHEVGW
Sbjct: 125 SRFRLQPRRKFCVVGRLSHEVGW 147


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 162 INFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITAASRPSKCPRPSIT 19
           + +  F   +P     +  TTT+ FP+S T   T A +PS   +P+ T
Sbjct: 200 VRYATFSPNIPMTTSTTPTTTTSTFPTSTTEKSTTA-QPSTTTKPTTT 246


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
            protein 25, isoformb protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 141  KKLPEMLICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITMALPRA 1
            KK  E ++ S+    T  PS+ T      ++P + P P +   +P A
Sbjct: 873  KKSSEPILSSEVLQPTRLPSATTSQAKPVTQPIRHPSPPVATVIPTA 919


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
            protein 25, isoforma protein.
          Length = 1237

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 141  KKLPEMLICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITMALPRA 1
            KK  E ++ S+    T  PS+ T      ++P + P P +   +P A
Sbjct: 980  KKSSEPILSSEVLQPTRLPSATTSQAKPVTQPIRHPSPPVATVIPTA 1026


>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 112 TTNDHNFVSFQQDLSNYCGQSTEQVPAPVD 23
           T N HNFVS  +D    C  + + +  PVD
Sbjct: 396 TKNAHNFVSLSRD-GRICSWNVDNLTQPVD 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,279,116
Number of Sequences: 27780
Number of extensions: 250556
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)