Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L10
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   2.5  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    24   5.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   5.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   7.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    23   7.7  

>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 177 TELAVEMYNKYPDEKIVGYYRGSTPEFI 260
           +++ V +Y+KY D+K +G  +  TP F+
Sbjct: 233 SQMVVSVYDKYEDDKFLGSVK-ITPIFL 259


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 216 HPDTYYTSPQPVPLYF 169
           HP    TSPQP PL F
Sbjct: 331 HPLNISTSPQPSPLSF 346


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 132  IFGNHLRNVIGFRSITELAVEMYNKYPDEKIV 227
            +F +   N  GF S T+  VEM N +  E  +
Sbjct: 921  LFNDSAGNAFGFSSKTDSNVEMLNDFDFESFL 952


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 181  NWLWRCIISI 210
            NWL RCIISI
Sbjct: 1389 NWLKRCIISI 1398


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -3

Query: 271 NSRTINSGVLPL*YPTIFSSGYLLYISTASSVILLKPITFLKWF 140
           NSRT+NS   P       S GYL     A       P+T  KWF
Sbjct: 784 NSRTLNSSFAPKILEDSISCGYL--DQPAPQEYTNAPVT--KWF 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,861
Number of Sequences: 5004
Number of extensions: 22076
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)