Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L10
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    27   2.9  
03_05_1055 - 29998212-29998388,29998464-29998786,29999066-29999243     26   5.1  
12_01_0654 - 5542349-5542480,5542491-5542666,5542835-5542937,554...    25   8.9  

>08_02_1442 + 27120604-27120890,27121029-27121166,27121280-27121382,
            27121877-27122036,27122927-27123114,27123203-27124770,
            27124882-27125869,27126595-27127098,27127347-27127433,
            27127753-27127821,27128012-27128041
          Length = 1373

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 108  VKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPD 215
            V H R L    +HL N+   RS+T   ++M    PD
Sbjct: 1209 VSHCRSLVALPSHLGNLPRLRSLTTYCMDMLEMLPD 1244


>03_05_1055 - 29998212-29998388,29998464-29998786,29999066-29999243
          Length = 225

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 72  TTRNHDYWFKRNVKHDRPL 128
           TT NH++WF   V +D+ L
Sbjct: 196 TTDNHEFWFMGFVSYDKAL 214


>12_01_0654 -
           5542349-5542480,5542491-5542666,5542835-5542937,
           5542971-5543084,5543104-5543163,5543258-5544316
          Length = 547

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 102 RNVKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPDEKIVGYYRGSTPEFI 260
           +N+K+ + L       + VI      ++ V+ +NK+ DE++ GY+ G   + +
Sbjct: 356 KNLKNYKKLEKKLQETKRVIAGHLREDMTVQFWNKFLDEQL-GYFDGGMEDIM 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,476,193
Number of Sequences: 37544
Number of extensions: 137430
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)