Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L10
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92827-9|CAB54200.1| 510|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z92827-8|CAB07330.1| 527|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z54269-6|CAB54208.1| 510|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z54269-5|CAA91023.1| 527|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z81565-4|CAB04582.3| 511|Caenorhabditis elegans Hypothetical pr... 32 0.069
Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z81015-3|CAB02656.1| 266|Caenorhabditis elegans Hypothetical pr... 28 1.5
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 3.4
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 3.4
Z81124-5|CAB03374.1| 328|Caenorhabditis elegans Hypothetical pr... 25 7.9
U64836-2|AAG24060.2| 137|Caenorhabditis elegans Serpentine rece... 25 7.9
U64836-1|AAX22289.1| 321|Caenorhabditis elegans Serpentine rece... 25 7.9
>Z92827-9|CAB54200.1| 510|Caenorhabditis elegans Hypothetical
protein F02C12.5c protein.
Length = 510
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 84 HDYWFKRNVKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPDE--KIVGYYRGSTPEF 257
H YW +R + LP GN+ + + + +K+ + K+ GYY G+ P
Sbjct: 22 HTYWRRRGISGPEGLPFIGNYY----DLADVNKPRGYLIHKWTQKFGKVFGYYEGAVPVL 77
Query: 258 IVRELDLARSIVSADF 305
+V ++D+ + + F
Sbjct: 78 VVSDMDMLQELFLKKF 93
>Z92827-8|CAB07330.1| 527|Caenorhabditis elegans Hypothetical
protein F02C12.5a protein.
Length = 527
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 84 HDYWFKRNVKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPDE--KIVGYYRGSTPEF 257
H YW +R + LP GN+ + + + +K+ + K+ GYY G+ P
Sbjct: 22 HTYWRRRGISGPEGLPFIGNYY----DLADVNKPRGYLIHKWTQKFGKVFGYYEGAVPVL 77
Query: 258 IVRELDLARSIVSADF 305
+V ++D+ + + F
Sbjct: 78 VVSDMDMLQELFLKKF 93
>Z54269-6|CAB54208.1| 510|Caenorhabditis elegans Hypothetical
protein F02C12.5c protein.
Length = 510
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 84 HDYWFKRNVKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPDE--KIVGYYRGSTPEF 257
H YW +R + LP GN+ + + + +K+ + K+ GYY G+ P
Sbjct: 22 HTYWRRRGISGPEGLPFIGNYY----DLADVNKPRGYLIHKWTQKFGKVFGYYEGAVPVL 77
Query: 258 IVRELDLARSIVSADF 305
+V ++D+ + + F
Sbjct: 78 VVSDMDMLQELFLKKF 93
>Z54269-5|CAA91023.1| 527|Caenorhabditis elegans Hypothetical
protein F02C12.5a protein.
Length = 527
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 84 HDYWFKRNVKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPDE--KIVGYYRGSTPEF 257
H YW +R + LP GN+ + + + +K+ + K+ GYY G+ P
Sbjct: 22 HTYWRRRGISGPEGLPFIGNYY----DLADVNKPRGYLIHKWTQKFGKVFGYYEGAVPVL 77
Query: 258 IVRELDLARSIVSADF 305
+V ++D+ + + F
Sbjct: 78 VVSDMDMLQELFLKKF 93
>Z81565-4|CAB04582.3| 511|Caenorhabditis elegans Hypothetical
protein K06G5.2 protein.
Length = 511
Score = 32.3 bits (70), Expect = 0.069
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +3
Query: 84 HDYWFKRNVKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPDEKIVGYYRGSTPEFIV 263
H YW +R ++ LP G+ ++ + + K K+ GYY G P +V
Sbjct: 22 HSYWKRRGIEGPVGLPFIGSFY-DLADREKPRGFIINKWTKMFG-KVFGYYEGVIPVLVV 79
Query: 264 RELDLARSIVSADF 305
+LD+ + + F
Sbjct: 80 SDLDMLQEMFIKKF 93
>Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical
protein R05H5.2 protein.
Length = 372
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 123 PLPIFGNHLRNVIGFRSITELAVEMYNKYPDEKIVG 230
P FG H++ + S+ EL +Y++Y + +G
Sbjct: 181 PFEYFGGHIKGAVNIYSLDELGKYLYDEYGVKSTLG 216
>Z81015-3|CAB02656.1| 266|Caenorhabditis elegans Hypothetical
protein C11E4.4 protein.
Length = 266
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 90 YWFKRNVKHDRPLPIFGNHLRNVIGFRSITELAVEMYNKYPDEKIVGYYR 239
+W RN+ R P+FGN N+ T L + +++ P +Y+
Sbjct: 186 HWGLRNIDQSRENPLFGN--SNITEIEYTTHLTMLLHDMVPALSFPSHYK 233
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 162 GFRSITELAVEMYNKYPDEKI 224
GF+SITE+ E N P E+I
Sbjct: 44 GFKSITEIIAEADNNIPSEQI 64
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 162 GFRSITELAVEMYNKYPDEKI 224
GF+SITE+ E N P E+I
Sbjct: 44 GFKSITEIIAEADNNIPSEQI 64
>Z81124-5|CAB03374.1| 328|Caenorhabditis elegans Hypothetical
protein T21B4.7 protein.
Length = 328
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 254 FWCTTSVVPNDFFIRILIIHLHS 186
FWCTTS + FF + HS
Sbjct: 65 FWCTTSQITLSFFFTPFNFYPHS 87
>U64836-2|AAG24060.2| 137|Caenorhabditis elegans Serpentine
receptor, class x protein92, isoform a protein.
Length = 137
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 93 WFKRNVKHDRPLPIFGNHLR 152
+ K VKH LPI G HLR
Sbjct: 105 FLKTKVKHINILPIVGGHLR 124
>U64836-1|AAX22289.1| 321|Caenorhabditis elegans Serpentine
receptor, class x protein92, isoform b protein.
Length = 321
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 93 WFKRNVKHDRPLPIFGNHLR 152
+ K VKH LPI G HLR
Sbjct: 289 FLKTKVKHINILPIVGGHLR 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,501,466
Number of Sequences: 27780
Number of extensions: 122937
Number of successful extensions: 321
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -