Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L08
(271 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 21 2.4
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 21 2.4
DQ659247-1|ABG47445.1| 980|Tribolium castaneum chitinase 7 prot... 21 2.4
AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve co... 21 3.1
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 20 5.4
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 20 5.4
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 20 5.4
AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5 prot... 19 9.5
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 19 9.5
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 19 9.5
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 19 9.5
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 19 9.5
>EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase
2B protein.
Length = 528
Score = 21.0 bits (42), Expect = 2.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2
Query: 173 NYWLRVRYQDTLLQLEG 223
NYW + Y D L ++ G
Sbjct: 257 NYWSQGSYDDWLAEMAG 273
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 21.0 bits (42), Expect = 2.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2
Query: 173 NYWLRVRYQDTLLQLEG 223
NYW + Y D L ++ G
Sbjct: 264 NYWSQGSYDDWLAEMAG 280
>DQ659247-1|ABG47445.1| 980|Tribolium castaneum chitinase 7
protein.
Length = 980
Score = 21.0 bits (42), Expect = 2.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -2
Query: 243 FIPHHIFPSSCSRV 202
F P HI P C+ +
Sbjct: 106 FTPEHIIPDLCTHI 119
>AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve cord
defective protein protein.
Length = 168
Score = 20.6 bits (41), Expect = 3.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +1
Query: 100 HSKSLLNLSCKQIKDFVNGHNYR 168
H S++ L+ Q+K + H Y+
Sbjct: 72 HLASIIRLTPTQVKIWFQNHRYK 94
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 19.8 bits (39), Expect = 5.4
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = +2
Query: 143 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 247
+ + I+ N WL + + D L+ + + G+K+
Sbjct: 43 VDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKD 77
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 19.8 bits (39), Expect = 5.4
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = +2
Query: 143 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 247
+ + I+ N WL + + D L+ + + G+K+
Sbjct: 43 VDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKD 77
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 19.8 bits (39), Expect = 5.4
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = +2
Query: 143 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 247
+ + I+ N WL + + D L+ + + G+K+
Sbjct: 43 VDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKD 77
>AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5
protein.
Length = 533
Score = 19.0 bits (37), Expect = 9.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -1
Query: 232 PYISFQLQQGVLIPD 188
P F+LQ+G +P+
Sbjct: 187 PIAKFRLQEGYHVPE 201
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 19.0 bits (37), Expect = 9.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 88 IGHVHSKSLLNLSCKQIKD 144
I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 19.0 bits (37), Expect = 9.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 88 IGHVHSKSLLNLSCKQIKD 144
I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 19.0 bits (37), Expect = 9.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 88 IGHVHSKSLLNLSCKQIKD 144
I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 19.0 bits (37), Expect = 9.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 88 IGHVHSKSLLNLSCKQIKD 144
I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,060
Number of Sequences: 336
Number of extensions: 1307
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used: 4485306
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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