Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L08
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    28   0.20 
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   2.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    24   4.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   4.3  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    24   4.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   4.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   5.7  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    23   7.5  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    23   9.9  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    23   9.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   9.9  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    23   9.9  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    23   9.9  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.20
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 88  IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 195
           I H+ H KS L+    ++   +N HN+R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 46  MAVRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 156
           MAV   ++  +V+   ++  K LL+  CK + + + G
Sbjct: 91  MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 GHNYRRQLLAKGQVSGHPAAT 216
           G N+RRQLL  G+  G  AA+
Sbjct: 854 GDNWRRQLLENGKSFGLEAAS 874


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 70  LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHN 162
           L+++V I   H +S L    K IKDF N H+
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWNPHS 902


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 143 ISSTDTIIGDNYW 181
           I+  DT  GDNYW
Sbjct: 229 ITQCDTATGDNYW 241


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 158  CPLTKSLICLHDKFSRDLLWT 96
            CP ++    L  +F RD LW+
Sbjct: 1352 CPGSRQFTVLQSRFQRDHLWS 1372


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 119 TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQLEGN 226
           T H   S+ SS      +N   RVRY +TLL+   N
Sbjct: 58  TYHMPSSRKSSFSPEYVENLESRVRYLETLLKKNTN 93


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 108 LTMDVSNTYDHCQNKKRAYGHCSVV 34
           L  D  +    C N  R YGH S++
Sbjct: 316 LETDSPDMITECLNAVRKYGHVSII 340


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 189 TLSQ*LSPIIVSVDEIFDLFA 127
           TL++ LSP I+ VDEI  L +
Sbjct: 545 TLAKKLSPSIIFVDEIDSLLS 565


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 17  YRSW*HTTEQWPYARFLFWQWSY 85
           Y  W H+ +  PY   + WQ +Y
Sbjct: 141 YCIWSHSKKMLPYQALVNWQNAY 163


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 134 CLHDKFSRDLLWTCPIHTTIAK 69
           C  +    DL++TC I  T+ K
Sbjct: 358 CFAENVQGDLIFTCEISLTVLK 379


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 264 RCFSC*FFIPHHIFPSSCSRVS 199
           +C SC F IP H F S    +S
Sbjct: 230 QCVSCPFQIPGHFFISKSLALS 251


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 187 GQVSGHPAATGRKYMVWDEELAAKA 261
           GQ++    A     M+WD+++A  A
Sbjct: 411 GQITEKDVARVASEMIWDKDIAVSA 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,076
Number of Sequences: 5004
Number of extensions: 20983
Number of successful extensions: 58
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)