Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L06
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 140 5e-35
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 83 1e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 64 4e-12
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 43 1e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 7e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 2e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.002
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.56
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 0.97
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 2.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.9
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 5.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.2
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 9.0
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 23 9.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 23 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 140 bits (339), Expect = 5e-35
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = +2
Query: 116 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILRLK*PIE 328
RGIL LK PIE
Sbjct: 62 RGILTLKYPIE 72
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 82.6 bits (195), Expect = 1e-17
Identities = 36/65 (55%), Positives = 49/65 (75%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRL 313
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L++
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 314 K*PIE 328
+ PIE
Sbjct: 72 QRPIE 76
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 64.5 bits (150), Expect = 4e-12
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +2
Query: 122 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 295
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 296 RGILRLK*PIE 328
R +L++K P+E
Sbjct: 62 RSLLQVKYPME 72
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.7 bits (96), Expect = 1e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 283
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 7e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 220
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 2e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 229
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.10
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 179 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 301
G+ PRA F ++ P H G+++ M KD G+E S +G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.56
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 276 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 115
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 0.97
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 146 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKRGILR 310
N +GM + R F S VG + VG Q+DSY+ D++ S+R R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSERSYRR 377
Query: 311 LK 316
++
Sbjct: 378 VR 379
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 126 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 218
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 3.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAG 181
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 5.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 166 FAHSGPIVYDQRGNFLV 116
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 222 RPTIEGNTARGASSPAKPALHIPDPLSTTNAATS 121
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 216 TIEGNTARGASSPAKPALHIPDPLSTT 136
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 165 LHIPDPLSTTNAATSSSHI 109
+H PD LS N++ S +H+
Sbjct: 369 IHYPDDLSYFNSSRSKAHV 387
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 217 HDRGKYGAGSVVSRETGFAHSGPIVYDQRGN 125
+ RG Y GSV RET G V R N
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,745
Number of Sequences: 5004
Number of extensions: 22760
Number of successful extensions: 73
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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