Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L05
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    23   6.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.9  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    23   8.9  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    23   8.9  

>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 82  LPRMVNTLNLMVALPPCYGCLTMFSL 5
           +P     LNL +A P C+G + M +L
Sbjct: 214 VPLYHEALNLTMANPSCHGLILMNNL 239


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = -2

Query: 228  SHNLLLSYNSKYTPAILSLAFLYISIRPHSYYLLFSALTTISSVVK 91
            +HN+ + +N+    A++S       +R  +YY+   A+  +  + K
Sbjct: 1845 AHNVQVKWNNFIRNAVMSYVHEVERVRGFAYYMSQKAIVFLRDLEK 1890


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 193 HSSHTFFGIPLHFHPSSFI 137
           +S +  F  P H+HP  F+
Sbjct: 149 YSKYAPFNSPSHYHPKRFL 167


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 180 VWLECILNYMKGVNY 224
           VWL+ ++NY+  + Y
Sbjct: 253 VWLDALINYISVIGY 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,205,958
Number of Sequences: 5004
Number of extensions: 22856
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)