Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L05
         (259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241...    27   2.7  
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920...    26   3.6  
03_02_0474 - 8759585-8759626,8759753-8759893,8760001-8760093,876...    25   6.3  

>06_01_0335 +
           2412766-2415655,2416108-2416208,2416871-2416895,
           2416977-2417049,2417191-2417373,2418164-2418227,
           2418427-2418447,2418862-2418905,2420575-2420650,
           2421359-2421373
          Length = 1163

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 219 LLLSYNSKYTPAILSLAFLYISIRPHSY 136
           L LSY  KY P+ L   FLY+SI P  +
Sbjct: 377 LALSY--KYLPSHLKPCFLYLSIFPEDF 402


>06_01_1196 +
           10289708-10289823,10290828-10291541,10291614-10292058,
           10292329-10293642
          Length = 862

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 213 LSYNSKYTPAILSLAFLYISIRPHSY 136
           LSYN  Y P+ L   FLY+SI P  +
Sbjct: 395 LSYN--YLPSHLKQCFLYLSIFPEDF 418


>03_02_0474 -
           8759585-8759626,8759753-8759893,8760001-8760093,
           8760194-8760352
          Length = 144

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 95  LSDDVTQNGKHTKLDGCPTTMLWLP 21
           LSDD   + +H    G P T  W+P
Sbjct: 103 LSDDPDASERHASCKGNPATNEWIP 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,594,606
Number of Sequences: 37544
Number of extensions: 139679
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)