Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L05
         (259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical pr...    31   0.11 
Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical pr...    31   0.15 
AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical ...    28   0.80 
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    27   2.4  
AF078788-9|AAC26963.1|  132|Caenorhabditis elegans Hypothetical ...    27   2.4  
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    26   4.2  
AL032657-2|CAA21738.1|  368|Caenorhabditis elegans Hypothetical ...    26   4.2  

>Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical
           protein T11F9.9 protein.
          Length = 299

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 45  ATIKFSVFTILGNIVT*QQMRLWSKH*IVGNMNEDGWKCRGMPKKVWLECILNYMKGVNY 224
           + + FSV  +L   +T   +  +  H +   MN++   CRG  K +W E  +N +K + +
Sbjct: 16  SAVAFSVVAVLSVCITLPMVHSYVHH-VKRTMNQEVQFCRGSAKDIWSE--VNQLKSIQH 72


>Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical
           protein F55C10.2 protein.
          Length = 299

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 45  ATIKFSVFTILGNIVT*QQMRLWSKH*IVGNMNEDGWKCRGMPKKVWLECILNYMKGVNY 224
           + + FSV  +L   +T   +  +  H +   MN++   CRG  K +W E  +N +K + +
Sbjct: 16  SAVAFSVVAVLSVCITLPMVHNYVHH-VKRTMNQEVQFCRGSAKDIWTE--VNELKSIQH 72


>AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical
           protein T24E12.9 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 213 LSYNSKYTPAILSLAFLYISIRPHSYYLLFSALTTISSVVK*RCYPEW 70
           L YN +Y  A+ + A    +  PH Y  L S + T +S +     PEW
Sbjct: 472 LEYNQRYAEALANHATCDANNNPHPYLPLQSHVRTAASAI----VPEW 515


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 39  GRATIKFSVFTILGNIVT*QQMRLWSKH*IVGNMNEDGWKCRGMPKKVW 185
           G A + FS   +L   +T   +  + +H +   M+++ + C+G  K VW
Sbjct: 14  GYAAVCFSAMAVLSVCITLPMVYNYVQH-VRTQMHQELYACKGSAKDVW 61


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 179 FLWHSSTFPSVLIHITYYLVL*PQSHLLLSDDVT 78
           F W+  TF  +++ +  YLV+  Q H + +   T
Sbjct: 94  FFWYFETFTQIVMALNRYLVICLQKHHIFTTTTT 127


>AF078788-9|AAC26963.1|  132|Caenorhabditis elegans Hypothetical
           protein ZC190.10 protein.
          Length = 132

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 132 GNMNEDGWKCRGMPKKVWLEC 194
           GN + +  +CR + K  WL+C
Sbjct: 64  GNASNNSKRCRNLQKSSWLQC 84


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +1

Query: 25  NHSMVVGQ---PSSLVCLP 72
           NHSM  G+   PSS+VCLP
Sbjct: 788 NHSMSAGETPRPSSIVCLP 806


>Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical
           protein F55C10.3 protein.
          Length = 266

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 120 H*IVGNMNEDGWKCRGMPKKVWLECILNYMKGVNY 224
           H +   MN++   CRG  K +W E  +N +K + +
Sbjct: 7   HHVKRTMNQEVQFCRGSAKDIWTE--VNELKSIQH 39


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 251 VSFGITRNLIIYSFHIIQNTLQPY 180
           ++F I  N+I++ FH I+ +++ Y
Sbjct: 351 ITFLIALNMILFGFHAIEGSIRTY 374


>AL032657-2|CAA21738.1|  368|Caenorhabditis elegans Hypothetical
           protein Y47H9C.2 protein.
          Length = 368

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 86  DVTQNGKHTKLDGCPTTMLWLP 21
           DV  NG+H K+  C T  L+ P
Sbjct: 153 DVVVNGEHVKMKYCTTCRLYRP 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,557,767
Number of Sequences: 27780
Number of extensions: 125539
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)