Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L05
         (259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.60 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.60 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         19   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   9.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 0.60
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 129 VGNMNEDGWKCRGMPKKVWLECILNYMKGVNY 224
           + N+    W+  G    VW+ C     KGV +
Sbjct: 199 IENIGSIRWELAGTLAVVWIMCYFCIWKGVKW 230


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 0.60
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 129 VGNMNEDGWKCRGMPKKVWLECILNYMKGVNY 224
           + N+    W+  G    VW+ C     KGV +
Sbjct: 252 IENIGSIRWELAGTLAVVWIMCYFCIWKGVKW 283


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 129 VGNMNEDGWKCRGMPKKVWLECILNYMKGV 218
           VGN+    W+  G    VW+ C     KGV
Sbjct: 169 VGNIR---WELAGTLLLVWILCYFCIWKGV 195


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 53  DGCPTTMLWL 24
           +GCP   LW+
Sbjct: 381 NGCPADWLWI 390


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 51  WLPYHHAMVASRC 13
           WL  +H+  A RC
Sbjct: 73  WLSINHSACAIRC 85


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +3

Query: 138 MNEDGWKCRGM 170
           +  DGW  RG+
Sbjct: 373 IGSDGWSARGL 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,900
Number of Sequences: 438
Number of extensions: 1655
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)