Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L04
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    41   4e-05
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    24   6.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    23   9.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    23   9.0  

>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 41.1 bits (92), Expect = 4e-05
 Identities = 15/43 (34%), Positives = 30/43 (69%)
 Frame = +1

Query: 88  IAASIVAFLKRQLEADTLSLDSRESVEVGVQCIETAFDLTPED 216
           + A+I+ +LK+ +   ++S + +ES+EV  QCI+ +F + PE+
Sbjct: 6   VTAAIIDYLKQAITTGSISEEEKESLEVAAQCIQDSFKIKPEE 48


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 155 ARVSRSACNVSRPPSILHPKMLRSH 229
           AR S    N SRP S L  K++ SH
Sbjct: 292 ARASPVQSNSSRPRSSLDSKIINSH 316


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 52  LVSFDMSNEVKIIAASIVAFLKRQLEADTLSLDSRESVE 168
           LVS    +  K ++AS+  FLK  LEA    +   ES E
Sbjct: 358 LVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 396


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 18   SNKIFLTPRYFFSFFRH 68
            + ++ LT  Y FSFFRH
Sbjct: 1296 NTELHLTKYYGFSFFRH 1312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,883
Number of Sequences: 5004
Number of extensions: 16565
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)